KEGG   Sinorhizobium mexicanum: FKV68_17475
Entry
FKV68_17475       CDS       T06706                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
emx  Sinorhizobium mexicanum
Pathway
emx03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:emx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FKV68_17475 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:emx03400]
    FKV68_17475 (ligD)
Enzymes [BR:emx01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FKV68_17475 (ligD)
DNA repair and recombination proteins [BR:emx03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FKV68_17475 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: QLL63106
UniProt: A0A859QRI5
LinkDB
Position
3637870..3640464
AA seq 864 aa
MAARNEPLSEYNRRRDFGRTSEPKGTVARAHAGRKRFLVQKHDATRLHYDFRLEWEGVLK
SWAVTRGPSLDPEDKRLAVRTEDHPLAYGDFEGTIPEEEYGGGTVMLWDTGWWEPEGDPS
EGLNKGKLSFQLHGNRMSGGWALVRMRPRDGEKRESWLLIKERDEDASEDGEHLVEENLT
SVRTGRTMDEIATGKGEKRGRVWHSNQSTAANLKAGAVAENNNRRKRPTRKSSGKLPPFK
APQLATLVSKAPAGDEWLNEAKFDGYRLMVAIGGGTVRCYTRNGLDWTEKFPAIASALAE
LDCKSALIDGEVVALSEEGSTFSALQKALRTGASTRLYAFDVVELDGKDLSRKPLIERKE
QLKALLDTLGATSTVQYSEHVRGNGEHVLAAICKAGQEGILAKEANAPYRSGRTRSWLKV
KCTKRQEFVIGGYTPSTKKGRAFASILLGTFEGEKLVYRGGVGTGFGQKTMEELAAAFAK
RRRKTSPFDSVPRERDRNSVWLKPDLVAEVDFTEFTADGHIRHGSFEGLREDKEAKAVKL
ERPNPTNAAETGKGKRATRPRTVAPAKGDADILGVHISHPDRILFEGQGITKIDLARYYA
VVADRMLPFAADHPVSLVRCPQGGQQHCFYQKHASDGFPQEIREAPIKEASGETEKYMYV
RDAEGLVAAVQMGTLEFHIWGATIDRLEKPDRLVFDLDPDPSVDFGTVKHAAAALRDELS
DIGLRTVAMVTGGKGVHVIVPLRPHAEWEGAKGFAKKMAQRFADRDPDHFIATMSKAKRK
GRIFIDWLRNDRGATAIAPYSTRARAGGPVATPVSWEELEGLAAANTFHIPDILERIESG
TDPWADIGEIKQSLTKKILGSVGD
NT seq 2595 nt   +upstreamnt  +downstreamnt
atggctgctcgcaatgaacccctttccgaatacaaccgacgccgcgactttggaaggacg
agcgagcccaagggaacggtcgcccgggcacacgccggcaggaaacgctttctggtccag
aaacacgatgccacccgcttgcactacgacttccggctcgaatgggagggtgtgctgaaa
agttgggccgtaacgcgcggccctagcctcgatccggaagacaagcgccttgcggtgcgc
accgaggaccatcccttggcctatggcgacttcgaaggtacgataccggaagaggagtac
ggcggcggcacggtgatgctgtgggacaccggctggtgggagccggaaggcgacccgtcc
gaaggcctgaacaagggcaaactctcgttccaattgcatggcaatcggatgagcggtggc
tgggcgctcgtgcgcatgcggccgcgagacggtgagaagcgcgaaagctggctgctgatc
aaggaaagggacgaagatgcctcagaggacggggaacacctcgtcgaagagaacctgaca
agtgtccgcaccggccgcaccatggatgaaattgccacgggcaagggcgaaaaacgggga
cgcgtctggcattcgaaccagagcacggcggccaatctcaaggctggcgcagttgccgag
aacaacaatcgacgcaagcgcccaacgcgaaaatcctccggaaagctgccccccttcaag
gcaccgcagcttgcgaccttggttagcaaagcacccgccggcgacgaatggttgaacgaa
gccaagttcgatggctaccgcttgatggttgccatcggcggcggcactgtccgttgctat
acgcgcaatggtctcgactggaccgagaagtttccagcgattgcctccgctttggccgag
ctcgattgcaagtccgccctgatcgacggcgaagtggtggcgctgtcggaggaaggctcg
accttttcggccctgcaaaaagcgctgaggaccggcgccagcacaaggctctacgcgttc
gatgtcgtcgaactcgacggcaaggacttgagccgcaagccgcttatcgagcgaaaggag
caactgaaggccttgctcgatacgctcggcgccacctcgaccgttcagtacagcgagcac
gttcgaggtaatggcgaacacgtgcttgccgccatttgcaaggccggacaggaaggcatt
cttgccaaggaggcgaatgctccctatcgcagcggacgcacccgaagctggctgaaggtc
aagtgcacgaaacgccaggagttcgtcatcggcggctataccccatcgacgaaaaaaggg
cgtgctttcgcatcgatccttctcggcaccttcgagggtgaaaagctggtataccgaggc
ggcgtcggcaccggcttcgggcaaaagaccatggaagagctcgcggccgccttcgcaaaa
cgcagacgcaagacgtcaccgttcgacagcgtgccgagagaaagggaccggaattccgtc
tggctgaagccggatcttgtcgcagaggtggatttcaccgagtttacggctgacggacat
atccgccatggctcattcgagggattgcgcgaggacaaggaggccaaggccgtgaaactg
gaaagaccgaatccgacgaacgccgcggagaccgggaagggcaaacgtgcgaccaggccg
cggacagtggcgccggccaagggtgatgccgatattctcggcgtgcacatctcgcatccg
gatcgcattctcttcgaaggtcaggggatcaccaagatcgacctcgcccgctactatgca
gtcgttgccgacaggatgctccctttcgcggccgaccacccggtttcgttggtgcgttgc
ccgcaaggcggacagcagcactgtttctatcagaaacatgccagcgacggctttccgcag
gagattcgcgaagcaccaatcaaggaggcctcaggcgaaaccgagaagtacatgtacgtt
cgcgacgccgagggcctcgttgccgccgtgcaaatgggcacgctggagttccacatctgg
ggcgcaacgatcgaccggctggagaagcctgatcgtctggtcttcgatcttgacccagat
cccagcgtcgacttcggcacggtgaagcatgcggcggccgcgctgcgcgacgaactttca
gatatcggcctcagaacagttgccatggtaaccggcggcaagggcgttcacgtgattgtg
ccacttcggccgcatgccgaatgggagggggccaagggattcgccaagaagatggcgcaa
cgttttgcagatcgcgatccggaccacttcatcgccactatgtcgaaggcgaagcgcaag
ggtcggatcttcatcgactggctccggaacgaccgcggcgcaaccgcgatcgccccctac
tccacccgcgcacgcgcgggtggccccgtcgctactccggtcagttgggaggaactcgaa
ggccttgcagccgccaacacattccacattccggacattcttgagcgcatcgaatccggc
accgatccgtgggcggatatcggcgaaatcaagcagtcgctgacgaaaaagatactcggt
tcggttggcgactga

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