KEGG   Sinorhizobium mexicanum: FKV68_31685
Entry
FKV68_31685       CDS       T06706                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
emx  Sinorhizobium mexicanum
Pathway
emx03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:emx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FKV68_31685 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:emx03400]
    FKV68_31685 (ligD)
Enzymes [BR:emx01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FKV68_31685 (ligD)
DNA repair and recombination proteins [BR:emx03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FKV68_31685 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: QLL65835
UniProt: A0A859QR17
LinkDB
Position
pEmeITTGR7c:complement(1502364..1504922)
AA seq 852 aa
MGLETYRKKRDFASTPEPKGRTARKKGHSFVIQKHDATRLHYDFRLEMDGVLKSWAVTKG
PSLVPGEKRLAVHVEDHPLDYGGFEGTIPKGEYGGGTVIVWDRGTWSPIGDARRGYAKGH
LDFELKGKKLGGRWHLVRMAGKPREKRENWLLIKGDDEAARSESDPDILEQRPESVVTGR
EIKDVAGEEPGWSSKSGRIRQRKGASNKAAGASQIEERTATRDVPDPSKIKGAKKAALPD
FLDPSLATLVSTAPVGERWIHEIKFDGYRLQARIEAGRVRLITRGGLDWTKKFGKTLVSS
LVDLPAAMALIDGEIVVESGSGASDFSALQADLSEGRSNRFRFYAFDLMHLDGYDLRALP
LIKRKELLEELIGQGTGLIRYSGHFEEEGDLVLRHACRLSLEGIVSKLRDAPYRSGRNKS
WVKSKCSERQEFVVGGYVPSTTSRKAIGSLVLGAYDGDVLHHVGRVGTGYTVAVAEDLFK
RLERLRVPSNPFGKRLSAEEARQVRYVRPELVAEVEFRSWTADGLLRHASFRGLREDKPA
REIVREAPKKTINQPKAPRRAVKLTHPDRLYWPDEGVTKEGLADYYADVWRFIGPHIVGR
PLALVRCPNGITGEKFFQKHVWKGLNPNIVLVNDPKDPPEEHSISIRDLDGLIALVQSAV
LEIHPWGSTVADWERPDRIIMDLDPGEDVPWEKVIEAAFETRDRLNDAGLAAFLKTSGGK
GLHVVAPLKAKAEWPAVKAFTKAIADAMASDTSDRYVSTITKSRRRGKILVDYLRNQRGA
TAVAPYSTRARPGAAVSMPLAWDELSPGIGPAYFTVENTPTRLAALSADPWEDFQAAAVP
LERSKTSRRKAA
NT seq 2559 nt   +upstreamnt  +downstreamnt
atgggcctcgagacctatcgaaagaaacgagatttcgcctcgacgcccgagcccaaggga
cgcacggcgcgcaaaaagggccacagcttcgtcattcagaagcacgacgcaacgcgtctg
cactacgatttccggctggaaatggacggcgtgttgaagagttgggcggtaaccaagggg
ccgagcctcgtccctggagaaaagcgtctcgccgttcatgtcgaggatcacccgctcgac
tacggaggtttcgaaggcaccatcccgaagggcgaatatggtggcggcacggtaatcgtg
tgggacaggggaacctggtcgccgatcggcgacgcacggcggggctatgcaaagggacat
cttgatttcgagctgaagggcaaaaagctcggcgggcgctggcatctcgttcgcatggcc
ggaaagccccgtgagaagcgcgagaactggctgttgatcaagggggacgacgaggcggcg
cgatcagagagcgacccggacattcttgagcaacggccggaatcggttgtaaccggccgc
gagatcaaggacgttgccggcgaggagccaggatggtcatcgaaaagcggcaggattcgc
cagagaaaaggcgccagcaacaaggcggcgggcgcttcacagatcgaggagcgcaccgct
actcgcgacgtccccgatccttcgaaaatcaagggcgcgaagaaggcagctttgcctgac
tttcttgatccttccttggcgacgctggtctctacggcgccggtcggtgagcgctggatc
catgaaatcaaattcgacggctaccgactgcaggcgcgcatcgaggctggccgtgtccgg
ctgatcacccgcggcgggctggactggacgaagaagttcggcaagacgctcgtgtcctcg
cttgtcgacctgcctgccgcaatggccctgatcgatggcgagatcgtcgtcgagagcggt
tcgggtgcatccgacttttccgcattgcaggccgacctgagcgaagggcgaagcaaccgc
ttccgtttctatgctttcgacttgatgcatctcgatggctatgacctgcgcgccttgccg
ctgatcaaacgcaaggagctcctggaggagctgattggtcagggcacgggattgatacgc
tacagcggccatttcgaggaagagggagacctggttctgcggcacgcctgcaggctgagt
ctcgagggaatcgtatccaaacttcgcgacgcgccttaccgatcgggtcggaacaagagt
tgggtaaaatccaagtgctcggagcgccaggaatttgtcgtcgggggctatgtcccctcg
accacatcgagaaaggccatcggttccctcgtgctcggagcctacgatggcgacgtactt
catcacgttggccgcgtcggtacgggctataccgtggctgtcgcggaagacctgttcaag
agactcgagcgcttgagagtcccctccaatccattcggcaagcgtctcagcgccgaggag
gctcgtcaggttcgatatgtgcggcccgagctcgtggccgaggtcgagtttcggtcctgg
acagccgatggtctgcttcgtcatgcctccttccgcggattgcgtgaggacaagcccgcg
cgcgaaatcgtccgagaagcaccgaaaaagacaatcaatcagcccaaggcgccgcgtcga
gccgtgaagctcacgcatcctgaccgactctactggccggatgagggtgtcacgaaagaa
ggattggcggactactatgccgacgtctggcgcttcatcggcccacacatcgtcgggcgt
ccgctggcattggtgcgatgcccgaatggaataacaggcgagaagtttttccagaagcac
gtctggaaggggctgaacccgaatattgtcctggtgaacgacccaaaggacccacccgag
gagcactcgatcagcatccgagatctcgatggcctgatagcgctcgtccaatcggcggtt
ctggaaatccatccttggggctccacggtcgcggactgggaaaggccggacaggatcatc
atggatcttgatcccggcgaggatgtgccgtgggagaaggtgatcgaggcggcgttcgag
acgcgagaccgcctgaacgatgccggtctcgctgcattcctgaaaacctccggcggaaag
gggcttcatgtggttgcgccgctcaaggccaaggctgagtggcccgccgtcaaggccttc
accaaggcgattgccgatgccatggcgtccgacacttccgaccgatacgtgtcgacgatt
acgaagtccaggcgacgcggcaagatcctggtcgattatctgcgcaatcagcgcggagcg
acggccgttgcgccctattcgacgcgggcgcggccgggcgcagcggtgtcgatgccgctc
gcttgggatgagttaagccccgggatcggtccggcatattttaccgtggagaacacaccg
acgcggctcgccgctctgagtgcggatccttgggaggatttccaagctgctgccgttccg
cttgagcgttcaaagactagtcgtaggaaggctgcttga

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