Sinorhizobium mexicanum: FKV68_31685
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Entry
FKV68_31685 CDS
T06706
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
emx
Sinorhizobium mexicanum
Pathway
emx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
emx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FKV68_31685 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
emx03400
]
FKV68_31685 (ligD)
Enzymes [BR:
emx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FKV68_31685 (ligD)
DNA repair and recombination proteins [BR:
emx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FKV68_31685 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QLL65835
UniProt:
A0A859QR17
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Position
pEmeITTGR7c:complement(1502364..1504922)
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AA seq
852 aa
AA seq
DB search
MGLETYRKKRDFASTPEPKGRTARKKGHSFVIQKHDATRLHYDFRLEMDGVLKSWAVTKG
PSLVPGEKRLAVHVEDHPLDYGGFEGTIPKGEYGGGTVIVWDRGTWSPIGDARRGYAKGH
LDFELKGKKLGGRWHLVRMAGKPREKRENWLLIKGDDEAARSESDPDILEQRPESVVTGR
EIKDVAGEEPGWSSKSGRIRQRKGASNKAAGASQIEERTATRDVPDPSKIKGAKKAALPD
FLDPSLATLVSTAPVGERWIHEIKFDGYRLQARIEAGRVRLITRGGLDWTKKFGKTLVSS
LVDLPAAMALIDGEIVVESGSGASDFSALQADLSEGRSNRFRFYAFDLMHLDGYDLRALP
LIKRKELLEELIGQGTGLIRYSGHFEEEGDLVLRHACRLSLEGIVSKLRDAPYRSGRNKS
WVKSKCSERQEFVVGGYVPSTTSRKAIGSLVLGAYDGDVLHHVGRVGTGYTVAVAEDLFK
RLERLRVPSNPFGKRLSAEEARQVRYVRPELVAEVEFRSWTADGLLRHASFRGLREDKPA
REIVREAPKKTINQPKAPRRAVKLTHPDRLYWPDEGVTKEGLADYYADVWRFIGPHIVGR
PLALVRCPNGITGEKFFQKHVWKGLNPNIVLVNDPKDPPEEHSISIRDLDGLIALVQSAV
LEIHPWGSTVADWERPDRIIMDLDPGEDVPWEKVIEAAFETRDRLNDAGLAAFLKTSGGK
GLHVVAPLKAKAEWPAVKAFTKAIADAMASDTSDRYVSTITKSRRRGKILVDYLRNQRGA
TAVAPYSTRARPGAAVSMPLAWDELSPGIGPAYFTVENTPTRLAALSADPWEDFQAAAVP
LERSKTSRRKAA
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgggcctcgagacctatcgaaagaaacgagatttcgcctcgacgcccgagcccaaggga
cgcacggcgcgcaaaaagggccacagcttcgtcattcagaagcacgacgcaacgcgtctg
cactacgatttccggctggaaatggacggcgtgttgaagagttgggcggtaaccaagggg
ccgagcctcgtccctggagaaaagcgtctcgccgttcatgtcgaggatcacccgctcgac
tacggaggtttcgaaggcaccatcccgaagggcgaatatggtggcggcacggtaatcgtg
tgggacaggggaacctggtcgccgatcggcgacgcacggcggggctatgcaaagggacat
cttgatttcgagctgaagggcaaaaagctcggcgggcgctggcatctcgttcgcatggcc
ggaaagccccgtgagaagcgcgagaactggctgttgatcaagggggacgacgaggcggcg
cgatcagagagcgacccggacattcttgagcaacggccggaatcggttgtaaccggccgc
gagatcaaggacgttgccggcgaggagccaggatggtcatcgaaaagcggcaggattcgc
cagagaaaaggcgccagcaacaaggcggcgggcgcttcacagatcgaggagcgcaccgct
actcgcgacgtccccgatccttcgaaaatcaagggcgcgaagaaggcagctttgcctgac
tttcttgatccttccttggcgacgctggtctctacggcgccggtcggtgagcgctggatc
catgaaatcaaattcgacggctaccgactgcaggcgcgcatcgaggctggccgtgtccgg
ctgatcacccgcggcgggctggactggacgaagaagttcggcaagacgctcgtgtcctcg
cttgtcgacctgcctgccgcaatggccctgatcgatggcgagatcgtcgtcgagagcggt
tcgggtgcatccgacttttccgcattgcaggccgacctgagcgaagggcgaagcaaccgc
ttccgtttctatgctttcgacttgatgcatctcgatggctatgacctgcgcgccttgccg
ctgatcaaacgcaaggagctcctggaggagctgattggtcagggcacgggattgatacgc
tacagcggccatttcgaggaagagggagacctggttctgcggcacgcctgcaggctgagt
ctcgagggaatcgtatccaaacttcgcgacgcgccttaccgatcgggtcggaacaagagt
tgggtaaaatccaagtgctcggagcgccaggaatttgtcgtcgggggctatgtcccctcg
accacatcgagaaaggccatcggttccctcgtgctcggagcctacgatggcgacgtactt
catcacgttggccgcgtcggtacgggctataccgtggctgtcgcggaagacctgttcaag
agactcgagcgcttgagagtcccctccaatccattcggcaagcgtctcagcgccgaggag
gctcgtcaggttcgatatgtgcggcccgagctcgtggccgaggtcgagtttcggtcctgg
acagccgatggtctgcttcgtcatgcctccttccgcggattgcgtgaggacaagcccgcg
cgcgaaatcgtccgagaagcaccgaaaaagacaatcaatcagcccaaggcgccgcgtcga
gccgtgaagctcacgcatcctgaccgactctactggccggatgagggtgtcacgaaagaa
ggattggcggactactatgccgacgtctggcgcttcatcggcccacacatcgtcgggcgt
ccgctggcattggtgcgatgcccgaatggaataacaggcgagaagtttttccagaagcac
gtctggaaggggctgaacccgaatattgtcctggtgaacgacccaaaggacccacccgag
gagcactcgatcagcatccgagatctcgatggcctgatagcgctcgtccaatcggcggtt
ctggaaatccatccttggggctccacggtcgcggactgggaaaggccggacaggatcatc
atggatcttgatcccggcgaggatgtgccgtgggagaaggtgatcgaggcggcgttcgag
acgcgagaccgcctgaacgatgccggtctcgctgcattcctgaaaacctccggcggaaag
gggcttcatgtggttgcgccgctcaaggccaaggctgagtggcccgccgtcaaggccttc
accaaggcgattgccgatgccatggcgtccgacacttccgaccgatacgtgtcgacgatt
acgaagtccaggcgacgcggcaagatcctggtcgattatctgcgcaatcagcgcggagcg
acggccgttgcgccctattcgacgcgggcgcggccgggcgcagcggtgtcgatgccgctc
gcttgggatgagttaagccccgggatcggtccggcatattttaccgtggagaacacaccg
acgcggctcgccgctctgagtgcggatccttgggaggatttccaagctgctgccgttccg
cttgagcgttcaaagactagtcgtaggaaggctgcttga
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