Emticicia sp. 21SJ11W-3: MB380_01300
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Entry
MB380_01300 CDS
T09449
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
emz
Emticicia sp. 21SJ11W-3
Pathway
emz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
emz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MB380_01300 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
emz03021
]
MB380_01300 (rpoC)
03400 DNA repair and recombination proteins [BR:
emz03400
]
MB380_01300 (rpoC)
Enzymes [BR:
emz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MB380_01300 (rpoC)
Transcription machinery [BR:
emz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MB380_01300 (rpoC)
DNA repair and recombination proteins [BR:
emz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MB380_01300 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
UTA68456
LinkDB
All DBs
Position
319394..323710
Genome browser
AA seq
1438 aa
AA seq
DB search
MSLKKNKKLNSDFNSITISLASPESILESSFGEVTQPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFRSLPNKI
GYLLGMSSKKLDQIIYYERYVVVQPGIKAEDGISANDFLTEEEYLDIVDKLPRENQMLDD
KDPNKFIAKMGAEALEMMLSRIKLDELSYDLRHAAATDTSQQRKAEALKRLKVVEALRDA
NTRIENKPEWMVIRMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRSEGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKDMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDA
VVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLVEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGQEAIMEASILMLASHNILNPANGAPITVPSQDMVLGLYYVTKGRVSSADDPVP
GDGMTFYSPEEVIIALNEGRISKHAHIKCRVKVKDENGQLVLKIVNTVAGRILFNQCVPE
EVGYLDELLTKKKLQQLIGRVFKEAGYARTAKFLDDIKELGYQTAFRGGLSIGLDNIIIP
EEKTKLITDAKAEVEEVQNNYMFGIITERERYNQIIDIWGRVNTRIREVLLRQLEADQKG
FNPIYMMMHSGARGSQEQVRQLGGMRGLMAKPQKNIQGSVGEIIENPILSNFKEGLDVLE
YFISTHGARKGLADTALKTADAGYLTRRLHDVAQDVVVNEVDCGTLRGIQVSALKDNEDI
VEPLSERILGRTSVYDIIDPLTKKLIIKSGEEITEEIAAEIDETAIETVEIRSALTCETQ
TGVCSKCYGRNLATGRMADIGEAVGVIASQSIGEPGTQLTLRTFHTGGTAQNVASDASIK
AKFGGVVQLEEMRTVQSSDREGNEITIVLGRRGEIRIVEEGTNNILITNNVPYGATLEVK
DGDVVKKGDPLCHWDQFNAVILSELDGTIEYEAIEENITFKEEADEQTGFRDKVIIESKD
RSKNPAIIIRTASGEDEKAYNLPVMARLTVENGQAIKAGQVLAKIPRAINMNRDITGGLP
RVTELFEARNPSNPAVVSEIDGIVQYGNVKRGNREIFVEAKDGVKMKYMVPLSKLILVQD
GDFVLAGDPLSDGAITPADILRIKGPTAVQEYLVNEVQAVYRQQGVKISDKHIEVIVRQM
MQKVEIVDSGDTLFLEYQMVDKWVVRLANDKIMDKKVVMDAGASDKFKPGQIITAREMRD
ENSRLKRADLAQIQVRDAMPAVSRPTLQGITTASLGTESFISAASFQETTKVLSEAAVRG
KRDMLEGLKENVIVGHLIPAGTGNRKYQNILVGSKAELEAAAEKRRSQEAAKQRREYV
NT seq
4317 nt
NT seq
+upstream
nt +downstream
nt
atgtctttaaagaaaaataaaaaacttaacagcgacttcaacagcataaccatcagcttg
gcttcacctgagtcaatcctggaaagctcgtttggagaagttacacagccggaaactatc
aactatcgtacatacaaacccgaaatgggtgggttgttttgcgagcgtattttcggacct
gtgaaagactgggagtgtcattgtggtaaatataagcgtattcgttacaaaggcattatc
tgcgaccgttgtggtgtagaggtaaccgaaaagaaagtgcgccgcgagcgcatggggcac
atcgaacttgtagtacctgtggcgcatatctggtacttccgcagtttacctaacaaaatc
gggtatttgttaggaatgtcgtctaagaagcttgaccaaattatttattatgaacgctac
gtggttgttcagccgggaatcaaggcagaagatggtatctctgccaacgacttcctgact
gaagaagaatatcttgacattgttgataaactgccaagagaaaaccagatgcttgacgat
aaagacccgaacaaatttatcgccaaaatgggtgcggaggcattagaaatgatgctttct
cgtatcaagctggatgaattgtcttatgacttacgccacgccgccgctactgatacttct
caacaacgtaaagctgaggctttgaaacgtctgaaagtagtagaggcattgcgtgacgcc
aatacacgtattgaaaacaaaccagagtggatggttatccgtatggtgccggttattcca
ccagaattgcgtccgcttgtacctcttgatggtggtcgtttcgcaacttctgacctgaat
gacctttatcgccgtgtgattatccgtaacaaccgtttgaaacgtctgttggaaatcaaa
gcgccagaggtaatcttgcgtaacgaaaaacgtatgttgcaagaggctgtcgattcacta
tttgacaactctcgtaaagtaaacgccgttcgttctgaaggtaaccgtgctttgaaatca
ctttcagatatgttgaaaggtaaacaaggccgtttccgccagaaccttttaggtaaacgt
gttgactactcgggtcgttcggtaattgtggtaggtccggaattgaaactacatgagtgc
ggtttgccaaaagatatggcagcagagctgtttaaaccgtttattatcagaaaactgatt
gaacgcggaatcgtgaaaacagtgaaatctgccaagaaaattgttgacagaaaagatgcc
gtagtttgggatattcttgaaaacgtattgaaaggccacccggttctgctaaaccgtgcc
cctacgcttcaccgtttgggtattcaggctttccagcctaaattggtagagggtaaggct
atccagttgcacccattagtttgtacggccttcaacgccgactttgacggtgaccagatg
gcggtacacgtgccgcttggccaggaagccatcatggaggcatctatcctgatgctggct
tcgcacaacatcctgaaccctgccaatggtgcaccaattacggtaccatcgcaagacatg
gtgttgggtctgtactacgtaactaaaggacgtgtttcttctgctgatgatccggttcct
ggtgatggaatgacattctattctcctgaagaggtaatcattgccttgaacgaaggtaga
atctctaaacacgcacacattaaatgccgtgtgaaagtgaaagatgaaaacggccagttg
gtattgaaaatagtaaatacagtggcaggtcgtattctgttcaaccagtgtgtgcctgaa
gaagtaggttatcttgacgaattgttgaccaagaaaaaacttcaacagctgattggtcgc
gtatttaaagaagccggatatgcccgtacagcaaaattccttgatgatattaaagaactg
ggttatcagacggccttcagaggtggtttgtcaatcggtttggataacatcattataccg
gaagaaaaaacaaaattgatcaccgatgccaaagcagaagtagaagaggtacaaaacaac
tatatgtttggtatcattaccgagcgtgagcgttacaaccagattattgatatctggggc
cgtgtaaacacacgtatccgtgaggtattgttgagacaattagaagcagaccagaaaggt
ttcaacccaatctatatgatgatgcactctggtgcacgtggttcgcaagagcaggtgcgt
cagttgggcggtatgcgtggattgatggcgaaaccacagaaaaatattcagggttcagta
ggtgaaatcatcgagaacccgattttgtcaaacttcaaagaaggccttgacgtactagag
tactttatctctacccatggtgcccgtaaaggtttggccgatacagccttgaaaacagcc
gatgcgggttatctgacacgtcgtttgcatgacgtagctcaggacgtggtagtaaacgaa
gtagactgcggtacactacgcggtattcaggtttctgcattgaaagacaacgaagatatc
gttgagccgttatcagaacgtattctgggtcgtacatcagtttatgatatcattgaccca
cttaccaaaaaactgattatcaagtcaggtgaggaaattactgaagaaattgctgctgaa
attgacgaaacagccattgaaacagtagagattcgttcggcattgacttgcgaaacgcaa
acaggtgtgtgttcgaaatgttacggacgtaacctggcaaccggccgtatggccgacatc
ggtgaagctgtgggtgttattgcctcgcagtcaatcggtgagcctggtacacagcttaca
cttcgtacgttccacacagggggtactgcccagaacgttgcctctgatgccagcatcaaa
gccaaattcggtggggttgttcaactggaagagatgcgtaccgtacaatcgtctgaccgt
gaaggtaacgaaattaccatcgtgttgggtcgtcgtggtgaaatccgtatcgttgaagaa
ggtaccaacaacatcctgattaccaataacgtaccttacggtgccacgcttgaagtaaaa
gatggcgatgttgtgaagaaaggtgacccgctttgtcactgggatcagttcaatgccgtt
attctttctgagttggatggtaccattgagtacgaagccatcgaagaaaatattaccttt
aaagaagaggctgacgaacagaccggtttccgtgataaggttattattgagtcgaaagac
cgttctaaaaacccggccattattatcagaaccgccagcggcgaagacgaaaaagcatat
aacttacctgtaatggcacgtttgactgtagaaaacggtcaggctatcaaagcaggtcag
gttctggccaagattcctcgcgctattaatatgaaccgcgacatcaccggtggtttgcct
cgtgtaaccgagttatttgaggcacgtaacccatcgaaccctgccgttgtttctgagatt
gacggtatcgttcagtacggtaatgttaaacgtggtaaccgtgagatttttgtagaagca
aaagacggtgttaaaatgaaatacatggtgcctctgtcgaaactgattctggtacaggat
ggtgacttcgttttagctggtgacccactatctgatggcgccattactccggctgatatt
ctacgtatcaaagggcctaccgccgttcaggaatacctcgttaacgaagtacaggccgtt
tatcgccagcaaggtgtgaagatttcagacaagcacattgaggttattgtacgtcagatg
atgcaaaaagttgaaatcgttgattcaggagatactttgttccttgaataccagatggta
gataaatgggtggttcgtttagcgaacgacaaaattatggacaaaaaagtagtaatggat
gccggtgcttctgacaagtttaagcctggtcagattatcaccgcccgcgaaatgcgtgat
gaaaacagccgtttaaaacgtgctgaccttgcgcagattcaggtgcgtgatgccatgccg
gccgtttctcgtcctaccttgcaaggtatcactactgcttcgttaggtacagagtcattc
atttctgcggcatcgttccaggaaaccaccaaagtattgtcagaggctgctgtaagaggt
aagcgcgatatgcttgaaggtttgaaagaaaacgttatcgtaggtcacctgattcctgcc
ggaactggtaaccgtaaataccagaacattctggttggtagcaaagctgaactggaagcc
gccgctgaaaagcgtcgctctcaggaagctgcgaaacaacgcagagaatatgtgtaa
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