Emticicia sp. 21SJ11W-3: MB380_03615
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Entry
MB380_03615 CDS
T09449
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
emz
Emticicia sp. 21SJ11W-3
Pathway
emz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
emz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MB380_03615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emz03019
]
MB380_03615
Enzymes [BR:
emz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MB380_03615
Messenger RNA biogenesis [BR:
emz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MB380_03615
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
ERCC3_RAD25_C
Helicase_RecD
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
UTA68896
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Position
complement(877254..878498)
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AA seq
414 aa
AA seq
DB search
MKFEEYRIAPEIKQNLEKLGFKKPTDIQYKSITPILRGEDVLAIAQTGTGKTAAFAIPVL
HLVNDTKKSARADAIRCLVMVPTRELAIQITEVFQKIGQGTKVKTFSLFGGVEQDPQILK
LEKGIDILVATPGRMFDLVSQGHLKLNHVEILILDEADHMLDLGFIKDIQDVIRFLPRKR
QTLFFSATINETIKKLAYSLVHNAIRIQISPNDKVAKNIQHAVIFVEMDDKRFFLERMVN
EHPESKILVFVRTKVRAERVLAAMERVGIKAETLHGDKEQQDRLKVLGNFRTGETKLLIA
TDVSARGIDIPNVDYVINYDLPDVPENYVHRVGRTGRGTQKGNALSFCSAEEKPILAEIE
AFLNKPVQVMELDKLEYAATKDFSKDVTAADLKALLKEAEQFEEMKRKKSKGKK
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaagaataccgaatagctccggaaataaagcagaatctggaaaaactgggc
tttaaaaagcctacggatatccagtataaatctataacgcccattttacgcggagaagat
gtgcttgccattgcacaaacgggcacgggcaaaaccgcagcttttgctattccggtatta
caccttgtaaacgacaccaagaaaagcgcaagggctgacgccatccgctgtctggtgatg
gtacccacccgtgagctggctatacaaataaccgaggtctttcaaaaaattggccaggga
acaaaagtaaaaacattctctctttttggtggtgttgaacaagaccctcagattttaaaa
ctcgaaaaaggcattgatattctggtagccacacccggccgtatgtttgacctggtaagc
caggggcatctgaaactgaaccatgtggagattctgatacttgacgaagccgaccacatg
cttgacctgggcttcattaaagacattcaggatgtaatccgctttcttccacgcaagcgg
cagacactcttcttctcggccactattaacgaaaccattaaaaagctggcttattcgctg
gtgcataatgccatccgtattcaaatatcgcccaacgataaagtggccaagaacattcag
catgccgtgatttttgtagaaatggacgacaaacgtttctttcttgaacgcatggtgaat
gagcatccggaaagcaaaattctggtatttgtacgtaccaaagtaagagcagagcgtgta
cttgctgctatggagcgggttggcataaaagccgaaaccctgcatggcgataaagaacaa
caagaccggctgaaagtgctggggaatttcagaaccggagaaaccaaactactgatagcc
acagatgtaagcgccagaggcattgatatacccaatgttgattatgtaataaactatgac
ctgcccgacgtacccgaaaactacgtacacagggttgggcgcacaggccgaggtacacaa
aaaggcaatgcgctttctttttgcagtgcagaagaaaaacccattctggccgaaattgaa
gccttcttaaacaaacctgtgcaggtaatggaattagataaattggaatatgcagctacc
aaagatttctcgaaagatgtaactgccgctgatttaaaggccttactgaaagaagctgag
cagtttgaagaaatgaaacgtaaaaaaagtaaaggtaaaaagtga
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