Emticicia sp. 21SJ11W-3: MB380_06220
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Entry
MB380_06220 CDS
T09449
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
emz
Emticicia sp. 21SJ11W-3
Pathway
emz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
emz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MB380_06220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emz03019
]
MB380_06220
03009 Ribosome biogenesis [BR:
emz03009
]
MB380_06220
Enzymes [BR:
emz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MB380_06220
Messenger RNA biogenesis [BR:
emz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MB380_06220
Ribosome biogenesis [BR:
emz03009
]
Prokaryotic type
rRNA helicases
MB380_06220
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Helicase_RecD
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
UTA69399
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All DBs
Position
1467467..1469206
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AA seq
579 aa
AA seq
DB search
MESVKFSELPLSEYVLRAIEELGFEYATPIQSAAIPVVMRGGDVIGQAQTGTGKTAAFGI
PAIEAVDETDRSTQVLIMCPTRELALQVKEQIQKLAKYKKGLNVAAIYGGESYERQFLAL
KKGSQIVVGTPGRIMDHIERKTLVLSDIKLAILDEADEMLNMGFREDIEKILSFSPTERQ
TLLFSATMSPEILSITKRFQKDPEIIKTLKKEVSNANIEQFFFAVRKEAKMEVMTRLIDV
HDLKLMLVFANTKSKVDEIVSDLQVRGYAAEGLHGDMRQQVRSQVMSKFRAGVTTILVAT
DVAARGIDVSGVDAVFNFDVPQDLEYYVHRIGRTGRAGKTGKAFMLISGRDKYRLRDIEN
YTKVKIEQGKIPTFNELVKTRHRKFIEQVRETLLAGVDNFYEDIVGELSEEGYSDAQIMA
ALINMQVGAVKSEFSDAQLSDSYREPRTQDARFERKDARGSFGSRDAGRREFGGRDQQRG
TERRFEPRDRRQDPGSRGSGRTDMVRLFISVGRKDNVAPNHIVGAITSEARIAGRAIGQI
DIYDKFSFVEVPQQDVKKVLDGMQGKTINAREVSMEIAK
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atggaatcagtaaaattttccgagcttccgctttcggagtatgttcttcgtgcgattgaa
gaattaggttttgagtacgctacccctatccagtcagcagctattccggttgtaatgcgt
ggtggcgacgtaattggccaggcgcaaacaggtacaggtaaaactgcagcctttggtata
ccggccatagaagcagttgacgaaacagacagaagcacacaggttttaattatgtgccct
acgcgtgagttggcactgcaggtaaaagagcagattcaaaaactggccaagtacaaaaaa
ggcttgaacgtagctgcgatttatggtggtgagtcatacgagcgccaattccttgccttg
aaaaaaggttctcagattgtggtaggtacgcccggccgtattatggaccacattgaacgc
aaaacacttgtgttgagcgatattaagctggctattcttgatgaagccgatgaaatgctt
aatatgggtttccgtgaagatattgaaaaaatcttgtctttttctccgactgaaagacaa
accctgttgttttcggctactatgtcgcccgaaatcctttcaataaccaagcgttttcag
aaagatcctgaaattattaaaacattgaagaaagaggtttcaaacgccaacattgagcag
tttttctttgctgtacgtaaagaagctaaaatggaggtaatgacccgcctgatagatgtg
catgatttgaaactgatgcttgtgtttgccaacacgaaatctaaagttgatgaaatcgtg
agcgatttgcaggtacgtggctacgccgctgagggtttgcatggagacatgcgccagcag
gtgcgttctcaggttatgagcaaattccgcgcgggtgtaacaacgatactggtagctact
gacgtagctgctcgtggtattgacgtttctggtgtagatgcagtctttaactttgatgta
ccccaagaccttgagtattacgtgcaccgcattggccgtactggtcgtgccggtaaaacc
ggaaaagcatttatgcttatttcaggccgtgataaataccgtctgcgtgacatcgaaaac
tatactaaagtaaaaattgaacaaggaaaaataccgacattcaatgaattggtaaagacg
cgtcatcgtaagttcattgagcaggtaagagaaacgcttcttgccggagtagacaatttc
tatgaagatatagtaggcgaattgagcgaagaaggctattctgatgcacaaattatggcc
gctttgattaacatgcaggttggagccgtaaaaagcgaattctctgatgcacaactttct
gacagctaccgtgaaccaaggactcaggacgcgagatttgaaagaaaagacgcaagaggc
agctttggcagcagagatgccggacgccgcgaatttggcggaagagaccagcaacgtgga
accgaacgccgttttgaaccccgtgacagacgtcaggacccgggtagccgtggttcaggc
agaacagacatggttcgcttgtttatcagcgtaggccgtaaagataacgtagcccctaac
catattgtaggtgccattacgtcagaagcccgcattgcaggccgtgccattggtcaaatt
gatatttatgacaaattcagttttgttgaggttcctcagcaagacgtaaaaaaagtatta
gacggtatgcaaggcaaaaccatcaatgcccgcgaggtaagtatggaaattgcgaagtaa
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