Emticicia sp. 21SJ11W-3: MB380_11235
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Entry
MB380_11235 CDS
T09449
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
emz
Emticicia sp. 21SJ11W-3
Brite
KEGG Orthology (KO) [BR:
emz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
emz03009
]
MB380_11235 (rlmD)
Enzymes [BR:
emz01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
MB380_11235 (rlmD)
Ribosome biogenesis [BR:
emz03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
MB380_11235 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
MTS
N6_N4_Mtase
Methyltransf_15
PCMT
TRM5-TYW2_MTfase
Cons_hypoth95
PrmA
FtsJ
Methyltransf_11
UPF0020
Motif
Other DBs
NCBI-ProteinID:
UTA66185
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Position
complement(2652879..2654288)
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AA seq
469 aa
AA seq
DB search
MARNKTFVIDSIEVENFAAEGKCFARHNGQVIFIEGSNVSPGDKVKLWVNNRKKNYAEAN
VLEILEASPLRIAPFCQHFGVCGGCKWQHVPYEKQLELKSQQVHDQLSRIGRLELPVIND
ILGSANTTFYRNKLEFTFSNSRWFTREEASLGEDTDKNALGFHVPKRFEKVLPIEKCYLQ
KDPSNQIRLALRDMANEQGYTYYDHIAHQGFLRNIMIRTTSIGHLMVMIQFAQNNESDIE
LVLGHLKEKFPEITSLNYVLNQKRNDTFHDLEVHTFAGKPYIEEKMEDLIFRIGAKSFYQ
TNSEQAYELYKLTREYAGLTGNELVYDLYTGTGTIANFVAKQARRVIGIEYVEAAVEDAK
INSEVNNIHNTEFFAGDMRKFLTREFIELKGKPDVIITDPPRAGMDEPVTRTILDVAPQR
IVYVSCNPATQARDLAILSEKYRILKVQPVDMFPHTHHVENIALLELKQ
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atggccagaaacaaaacattcgtaattgacagtatagaggttgaaaattttgcagcagag
ggtaaatgttttgcaaggcacaacggacaagtaatttttattgaaggcagtaacgtatcg
ccgggcgataaagtgaaactttgggttaataaccgcaaaaaaaactatgctgaggccaac
gttttagaaatactggaggcttctccgctgcgcattgctcctttctgccagcatttcggg
gtttgtggtggttgtaaatggcaacacgtgccttatgaaaaacaattagaactaaaaagc
cagcaggtgcacgaccaactgagccgcattggtaggcttgagctccccgttataaacgat
attcttggttcggccaatactactttttacagaaataagctggagtttaccttctctaac
agccgttggtttaccagagaagaagccagccttggagaagataccgacaaaaacgcactg
ggttttcatgtgcccaagcgtttcgaaaaagtattacccattgaaaaatgctatctgcaa
aaagacccttctaatcagataagactagccctgcgcgacatggccaatgagcagggatat
acctattatgaccacattgcgcaccagggtttcttacgtaatatcatgattagaaccacc
tctatcggccacctgatggtgatgattcaatttgcacaaaacaatgaatctgatattgag
ctggtactgggtcacctcaaagaaaagtttcctgaaatcacgtctttgaattacgttttg
aatcaaaagcgaaacgataccttccatgaccttgaagtgcatacttttgcaggcaagcca
tatatagaagaaaaaatggaggatctgattttcagaatcggtgccaaatctttctatcag
accaactctgagcaagcgtatgagctttacaaacttacccgcgaatacgcaggcctgaca
ggcaacgaactggtatatgacctttataccggtaccggcaccattgccaattttgtagct
aaacaagcccgcagggtaataggtattgaatacgtagaagccgcagttgaagatgcaaaa
atcaattctgaggtaaataacatacataataccgagttttttgccggtgatatgcgcaaa
tttctgacccgtgaatttattgaactaaagggaaaaccggatgtaattattactgacccg
ccacgcgccggaatggacgagccggttacccgtacaattctggatgtagccccgcaaaga
atagtttatgtaagttgcaaccccgccacacaagcccgtgatttggctattttgagcgaa
aaatatcgtattctaaaggttcaaccggttgatatgtttccgcatacacaccatgttgaa
aacatagctttgcttgaactaaagcagtaa
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