Emticicia sp. 21SJ11W-3: MB380_17320
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Entry
MB380_17320 CDS
T09449
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
emz
Emticicia sp. 21SJ11W-3
Pathway
emz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
emz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MB380_17320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emz03019
]
MB380_17320
Enzymes [BR:
emz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MB380_17320
Messenger RNA biogenesis [BR:
emz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MB380_17320
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
PhoH
AAA_19
GKRP-like_C
Ubiquitin_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
UTA67340
LinkDB
All DBs
Position
4077342..4078691
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AA seq
449 aa
AA seq
DB search
MENSFEKFELNRQLLNAIEDSGYTTPTPIQEKAIPLIMKGHDVLGIAQTGTGKTAAYLLP
VLMKIKYAQGHMPRCIIFAPTRELVIQIDKAVAELAKYTDLRHTAIYGGLGPKTQIETIK
KGIDIIVATPGRFMDLYLREEIGVKEIKVMVLDEADKMMDMGFMPQIRKILEVIPRKRQN
LLFSATFADKVEKLSEEFLEFPLRVEVTPQATTAETVKQRMYEVPNAQTKLNLLKYIFET
EEVQKAIIFTRSKEVADHVYNSMVQKIVPFNKIRVIHANKGQNTRINSMDAFREGSVSVL
VATDVAARGIDILQVSHVINFDVPIIYEDYVHRIGRTGRANHVGEAITFLTSPEDYHIKK
IEKIIRMEIPRMQIPEEVETPATPFDERQNYLREIDDQRKKEDPTFQGAFHEKKVRFPVM
KKSKPATSARKKHSPDKRKSTTKKSAKRR
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggaaaattcttttgaaaaatttgagctgaaccgtcagttgctgaatgccattgaagac
agcggatataccacgcccacacctatacaggaaaaggccataccgctgataatgaaaggg
catgatgtactgggtattgctcagacgggcaccggcaaaacagctgcttatcttttgcca
gtgctaatgaaaataaaatacgctcagggccacatgccccgctgcattatttttgcaccc
acccgcgaactggtaatacagatagataaggcagtggcagaactggccaaatataccgat
ttacgccacaccgccatttatggtgggctaggccccaaaacacagattgagaccatcaag
aaaggcatagatataattgtagccacaccgggcagattcatggatttgtaccttcgcgaa
gaaataggcgtaaaagaaataaaagtaatggtgcttgacgaagccgataagatgatggac
atgggatttatgccacagatacgcaaaattctggaggtgattccgcgaaaaagacagaat
cttttgttttcggccacttttgctgataaagttgagaaactttcagaagaatttcttgag
tttccgctacgggtagaggttaccccgcaggccactacagcagaaacagtaaaacagcgt
atgtatgaggtacccaatgcacaaaccaagctgaatctgcttaaatatatctttgaaaca
gaagaagtacaaaaagctatcatttttacgcgttcaaaagaagtggccgaccacgtttat
aattcaatggtgcaaaagattgtgccattcaataaaatacgtgtcatacatgccaataag
ggccaaaacacccgtattaactctatggatgcgttccgtgagggcagtgtaagtgttttg
gtggccacagacgtggcagcaagaggaatcgacattctgcaggtatcacatgttattaat
ttcgatgtacccattatttatgaagactacgtacatcgtatcggcagaaccgggcgtgcc
aatcatgttggtgaagctataaccttcctgacatctccggaagattatcacatcaaaaaa
attgagaagataatccgcatggagattccgcgcatgcagatacctgaagaggtagaaact
cctgccacgccttttgatgaacgccagaattatctcagagaaattgacgaccaacgcaag
aaagaagacccgacgtttcagggggctttccatgaaaagaaagtcagattcccagtcatg
aaaaaaagcaaaccggctacatcggcaagaaaaaaacactcaccggataaaagaaaaagc
acgacaaaaaaatctgcaaaacgcagataa
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