Enterobacter sp. N18-03635: ELK40_01800
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Entry
ELK40_01800 CDS
T08394
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
enb
Enterobacter sp. N18-03635
Pathway
enb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
enb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ELK40_01800 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
enb03021
]
ELK40_01800 (rpoC)
03400 DNA repair and recombination proteins [BR:
enb03400
]
ELK40_01800 (rpoC)
Enzymes [BR:
enb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ELK40_01800 (rpoC)
Transcription machinery [BR:
enb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ELK40_01800 (rpoC)
DNA repair and recombination proteins [BR:
enb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ELK40_01800 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AZV03928
LinkDB
All DBs
Position
227633..231856
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERHQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDENGEFVAKTSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGVEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDILKPGTADILVPRNTLLHEHWCDLLEANSVDSVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
SNAKSVVNSAGKLVVTSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANW
DPHTMPVITEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTTGGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDALARIPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIENAGSSEFLEGEQVEYSRVKIANRELEANGKIGATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPA
APQVTAEDASASLAELLNAGLGGSDNE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttattaaagtttctgaaagcgcagactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgatccgttcatggtctttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggccttttctgtgcgcgt
attttcgggccagtaaaagattacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgtgatctgtgagaagtgcggcgttgaagtgacccagaccaaagtgcgtcgtgag
cgcatgggccacatcgagctggcgtctccgaccgctcacatctggttcctgaaatctctg
ccgtcccgtatcggtctgctgctggatatgccgctgcgcgatatcgaacgtgttctgtac
ttcgaatcttatgtggttatcgaaggcgggatgacgaacctggaacgtcatcagatcctg
actgaagagcagtatctggacgcgctggaagagttcggtgacgaattcgacgcgaagatg
ggtgcggaagctattcaggccctgctgaagagcatggatctggagcaagagtgcgagcag
ctgcgtgaagagctgaacgaaaccaactccgaaaccaaacgaaaaaagctgaccaagcgt
atcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgact
gttctgccggttctgccgccagatctgcgtccactggttccgctggatggtggtcgtttc
gcaacgtccgatctgaacgatctgtatcgtcgcgttatcaaccgtaacaaccgtctgaaa
cgtctgctggatctggctgcgccggacatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggtagatgccctgctggataacggtcgtcgaggtcgtgcgatcaccggttctaac
aaacgtcctctgaaatctttggccgacatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcactggagctgttcaaaccgttc
atctacggcaagctggaactgcgtggcctcgccaccaccatcaaagccgctaagaaaatg
gttgagcgtgaagaagctgtcgtttgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccaactctgcaccgtttgggtatccaggcatttgagccagtc
ctgatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcctataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctcgaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtccccagcgaacggtgaaccaattatc
gttccttctcaggacgttgtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggtccgaaagaagctgagcgtatttatcgcgctggc
ctggcctctctacatgcgcgcgttaaagtgcgtatcaccgaatacgaaaaagatgaaaac
ggcgaattcgttgcgaaaaccagcctgaaagacacgaccgttggccgtgccattctgtgg
atgatcgtaccgaaaggtctgcctttctccatcgtcaaccaggcgctgggcaagaaagcg
atctccaaaatgctgaacacctgttaccgcattctgggtctgaagccgaccgttatcttc
gctgaccagacaatgtataccggctttgcttacgcagcgcgttcaggtgcatctgttggt
atcgatgacatggtcatcccagagaagaaacatgagatcatctctgaagcggaagccgaa
gttgctgagatccaggagcagttccagtctggtctggttaccgcgggcgaacgctataac
aaagttatcgatatctgggcagcggcgaacgatcgtgtatccaaagcgatgatggataac
ctgcagaccgaaaccgtgattaaccgtgacggcgtagaagagcagcaggtttccttcaac
agcatctacatgatggccgactccggtgcgcgtggttccgcagcacagattcgtcagctg
gcaggtatgcgtggtctgatggcgaagccagatggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgctcgt
aagggtctggcggataccgcactgaaaactgcgaactccggttatctgacgcgtcgtctg
gttgacgttgcgcaggatctggttgtgaccgaagacgattgtggcaccctcgaaggtatc
accatgaccccggttatcgagggcggtgatgttaaagagccactgcgcgatcgcgttctg
ggtcgtgtaaccgcggaagacattctgaagccgggtactgcagacattctggttccacgc
aacacgctgctgcacgagcactggtgtgacctgctggaagcgaactctgttgactccgtg
aaagtacgttccgttgtatcctgtgacaccgactttggtgtatgtgcgcactgctatggt
cgtgacctggcgcgtggccacatcatcaacaaaggtgaagcaatcggcgttatcgcggca
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatcaagctc
agcaacgcgaagtcagttgttaactccgctggcaagctggttgtgacctctcgtaacacc
gagctgaagctgatcgacgaattcggtcgtaccaaagagagctataaagtgccttacggt
gcggttatggcgaaaggtgatggcgagcaggttgccggcggtgaaaccgttgcaaactgg
gatccacacaccatgccggttatcaccgaagtaagtggtttcatccgcttcactgacatg
atcgacggccagaccattactcgtcagacggacgagctgaccggtctgtcttctctggtg
gttctggattctgctgaacgtactaccggtggtaaagatctgcgtcctgcactgaaaatc
gttgatgctcagggtaacgacgttctgatcccgggtaccgacatgcctgcgcagtacttc
ctgccgggtaaagcgatcgttcagctggaagatggcattcagatcggtgcgggtgatgct
ctggcgcgtattccacaggaatccagcggtaccaaggatatcaccggtggtctgccacgc
gttgcggacctgttcgaagcacgtcgtccgaaagagcctgcaatcctggctgaaatcagc
ggtatcatctccttcggtaaagagaccaaagggaagcgccgtctggttatcactccagta
gatggcagcgaaccgtatgaagagatgattcctaagtggcgtcagctcaacgtgttcgaa
ggtgaacgtgtagaacgtggtgacgtggtttccgatggtccagaagctccgcacgacatt
ctgcgtcttcgtggcgtacacgcagtaacgcgttacatcaccaacgaagtacaggacgtt
taccgtctgcagggcgttaagattaacgataagcacatcgaagttatcgttcgtcagatg
ctgcgtaaagcaaccatcgaaaacgcaggaagctccgagttcctggaaggcgagcaggtt
gaatactcacgcgtcaagatcgctaaccgcgaactggaagcgaacggcaaaatcggtgcg
accttctcgcgcgatctgctgggtatcaccaaagcgtctctggcaaccgagtccttcatc
tctgcagcatcgttccaggaaacgactcgtgtcctgaccgaagccgctgttgcaggtaaa
cgtgatgaactgcgcggtctgaaagagaacgtcatcgtgggtcgtctgatcccggctggt
accggttatgcgtaccatcaggatcgtatgcgtcgtcgtgctgcgggcgaactgccagct
gcaccgcaggtgactgctgaagatgcatccgcgagcctggcagaactgctgaacgcaggt
ctgggcggttccgacaacgagtaa
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