Enterobacter sp. N18-03635: ELK40_08900
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Entry
ELK40_08900 CDS
T08394
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
enb
Enterobacter sp. N18-03635
Pathway
enb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
enb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ELK40_08900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
enb03019
]
ELK40_08900
03009 Ribosome biogenesis [BR:
enb03009
]
ELK40_08900
Enzymes [BR:
enb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ELK40_08900
Messenger RNA biogenesis [BR:
enb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ELK40_08900
Ribosome biogenesis [BR:
enb03009
]
Prokaryotic type
rRNA processing factors
ELK40_08900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AZV05233
LinkDB
All DBs
Position
complement(1716545..1719664)
Genome browser
AA seq
1039 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIEARQGGVRCIIVPNDQME
TPHYHVLRVRKGEETSTLSYLLPKLHEEEMALPSDEEPAERKLPEQPALATFIMPEAPPE
AALEKPAAKPAAQKPEATAAKAQPAQPGLLSRFFGALKKMFAGEEVQPEQPKEEPKAAKP
ERQQDRRKRQNNRRDRNDRSDRNDRNERRDNRDNRSENNEGREQREDNRRNRREKQQQNV
EDREIRQQAGDESEKSKQRDDQQPRRERNRRRNDEKRQAQQEVKNLNREEPVEQQDGEQE
ERTQVMPRRKQRQLAQKVRFASEATEESAIVPVETRESAAGTQLAKVDLPAVVDNNVEQD
DNGENRDNAGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTIACASPEMASGKVW
IRYPVARPEQVVEEQPVTEEVIAPAAAVEEVVTEAATVVEPQVVETAAPQVAEVETTHPE
VIAAPVDAAPQLIAEEDVVVAEEIAEEAEPVAAVEDTAEAIVETTAEEIVQDVEIEVEPV
VEEPKAPEVKPEPVVSAPAAAHVATAPMTRAPAPDYVPEAPRHSDWVRPAFSFEGKGAAG
GHSATHQATAPATRPQSVE
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgcccttgtggat
gggcagcgcctgtacgatctggatatcgaaagtcctggacacgaacagaaaaaagcgaac
atttacaaaggtaaaatcacccgcattgaaccaagccttgaagctgcatttgtcgattac
ggtgctgagcgtcatggtttcctccctctgaaagaaattgcccgcgaatatttccctgca
aactacaacgcccatggccgcccaaacatcaaagatgtgctgcgtgaaggtcaggaagtt
atcgttcagattgataaagaagagcgtggcaacaaaggtgccgcactaacaacctttatc
agcctggcagggagctatctggttctgatgccaaacaacccgcgtgcgggtggcatctct
cgccgtatcgaaggtgatgaccgtaccgagctgaaagaagcgctggcaagcctcgagctg
cctgatggcatggggcttatcgtgcgtaccgcaggcgttggcaaatccgccgaagcgctg
cagtgggacctgagcttccgtctgaagcactgggaagccatccagaaagcagcggaaagc
cgccctgctccgttcctgatccaccaggaaagcaacgttatcgtgcgtgccttccgtgac
tacctgcgtcaggacatcggtgaaattctgatcgataacccgaaagtacttgagctggcg
cgccagcacattgccgcgctgggtcgtccggatttcaccagcaaaattaaactgtacacc
ggtgaaataccgctgttcagccactatcagatcgaatcccagattgaatccgccttccag
cgtgaagtgcgcctgccatccggcggttctatcgttatcgataccactgaagcgctgacc
gctatcgacatcaactccgctcgcgcaacgcgcggtggcgatatcgaagagaccgccttc
aacaccaaccttgaagccgctgatgaaatcgcccgccagctccgcctgcgcgacctgggt
ggtctgattgttatcgacttcatcgacatgacccctgttcgccaccagcgtgcagtagaa
aaccgtctgcgcgaagcggtgcgtcaggatcgtgcgcgtatccagattagccatatctca
cgctttggcctgctggagatgtcccgccagcgtctgagcccgtcgctgggtgagtccagc
catcacgtttgtccgcgctgctccggcaccggtaccgtgcgtgataacgaatcgctgtcc
ctctcgattctgcgtctgattgaagaagaagcgctgaaagagaataccaaagaggttcac
gcgattgtccctgtgccaattgcctcttacctgctgaacgaaaaacgtgcagcggtcagt
gcgattgaagcgcgtcagggtggcgttcgctgcatcatcgtgccaaacgatcagatggaa
accccgcactatcacgtgctgcgtgtccgtaaaggcgaagagacgtcaacgctcagctac
ctgctgccgaagctgcatgaagaagagatggccctgccgtccgatgaagagccagccgag
cgcaagctgcctgagcagcctgcgttagcgaccttcattatgcctgaagcaccgcctgaa
gcagccctggaaaaaccggcggccaaacctgcggcgcagaaacctgaagcaacggcagcg
aaagcccagccggcgcagcctggtctgctgagccgcttcttcggcgcgctgaagaagatg
tttgccggtgaggaagttcagcctgagcagccgaaagaagagccaaaagcggccaagcct
gagcgtcagcaggaccgccgtaagcgtcagaacaaccgccgcgatcgtaacgaccgcagc
gatcgcaatgaccgcaacgagcgtcgtgacaaccgtgacaaccgctctgagaataacgaa
ggccgtgagcaacgcgaagacaaccgtcgcaaccgtcgcgagaaacagcagcagaatgtt
gaagatcgtgaaattcgccagcaggcgggcgatgagtctgagaagagcaaacagcgtgac
gaccagcagccgcgccgtgaacgcaaccgtcgccgtaacgacgagaagcgtcaggcacag
caggaagtcaaaaacctgaaccgcgaagagcctgttgaacagcaggacggcgagcaggaa
gaacgtactcaggtaatgccacgtcgtaagcagcgccagcttgctcagaaagttcgtttc
gcctccgaagcaaccgaagagtcagcaattgtcccggttgaaacccgcgagagcgcagcc
ggtactcagcttgcaaaagttgacctgccagcggtcgttgataacaacgttgagcaggat
gataacggtgaaaaccgtgataacgccggcatgccgcgccgttcacgtcgttccccacgt
catctgcgcgttagcggccagcgccgtcgtcgctatcgtgacgagcgttacccaactcag
tcgccaatgccgctgaccattgcctgtgcttcaccagaaatggcctccggcaaagtctgg
atccgctacccggtagcgcgtccggagcaggttgttgaagaacagccagtaaccgaagag
gttattgcacctgcggcagcggtagaagaggtcgtgactgaagcggcaaccgtggtggaa
cctcaggttgttgaaactgcagcccctcaggtagctgaagtcgaaaccacgcatccggaa
gtgattgccgcgccggttgatgccgcaccgcagcttattgctgaagaagatgtcgtggtg
gctgaggaaatcgctgaagaagctgaacctgtagccgcagtggaagacaccgctgaagcc
atcgtcgaaacgaccgctgaagaaatcgttcaggacgttgagattgaggttgaaccggtt
gttgaagaaccgaaagcgcctgaagtgaaaccagagccggttgtttctgcgccagccgct
gcccacgtggcgacagcaccaatgacgcgcgctccggcgccggattacgtgcctgaagca
ccgcgtcacagcgactgggttcgcccggcattcagcttcgaaggtaaaggcgcagccggt
ggccacagtgcaacgcatcaggcgactgcacctgcaacgcgtccgcagtctgtcgaataa
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