Enterobacter sp. N18-03635: ELK40_10920
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Entry
ELK40_10920 CDS
T08394
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
enb
Enterobacter sp. N18-03635
Brite
KEGG Orthology (KO) [BR:
enb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
enb03019
]
ELK40_10920 (hrpA)
Enzymes [BR:
enb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ELK40_10920 (hrpA)
Messenger RNA biogenesis [BR:
enb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ELK40_10920 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
T2SSE
NACHT
ResIII
AAA_16
PhoH
SLFN-g3_helicase
NTPase_1
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AZV05617
LinkDB
All DBs
Position
2119623..2123525
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQKFTFPMLLQQLDSLMLRDKQRFARRLHGVKKVKNPDAQQAIYQEMAKEIEQAAGK
VLLREAARPAITYPENLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRG
IKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSKH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGNESAGDILIFMSGE
REIRDTADALSKRDLRHTEILPLYARLSNSEQNRVFQPHGGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ATVYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRQCRVDFLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHIALLTGLLSHIGMKDAEKQEYTGARNARFAIFPGSGL
FKKPPKWTMVAELVETSRLWGRIAARIDPEWVEPVAQHLLKRSYSEPHWERAQGAVMATE
KVTVYGLPVVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE
HKSRRRDILVDDEALFEFYDQRISHDVISARHFDSWWKKASKETPDLLNFEKSMLIKEGA
ESVSKLDYPNFWHQGNLKLRLTYQFEPGADADGVTVHIPLPLLNQVDESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDALEREFRRMTGTTIDRDDW
NWDQVPDHLKITFRVVDDKNKKLLEGRSLSELKEALKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPQEQQQMMWRGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCISCGVDKLIHEAGGPVWTEEGFAQLHEK
VRAELNDTVVDIAKQVEQILTTVFNINKRLKGRVDMTMALGLSDVKAQMAGLVYRGFVTG
NGFNRLGDTLRYLQAIEKRLEKMAIDPHRDRAQMLKVESVQQAWQQWLNKLPPARRDDED
VQAIRWMIEELRVSFFAQQLGTPYPISDKRILQAMEQISA
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacaaaaattcaccttcccgatgctcctgcaacagctcgattctctgatg
ctgcgcgacaaacagcgtttcgcccgccgtctgcacggcgttaagaaggttaaaaatcct
gatgctcagcaggccatttaccaggagatggcgaaagagattgaacaggcggcagggaaa
gtcttgctgcgcgaagccgcgcgaccggcgattacctacccggaaaacctgcccgtcagc
cagaaaaaacaggacatccttgaggccgtccgcgaccaccaggtggtgattgtcgcgggt
gaaaccggttcggggaaaaccacccagctgccgaaaatctgtatggaactgggccgcggg
atcaaaggcctgattggccacacccagccgcgtcgtctggcggcgcgcaccgttgccaac
cgtattgccgaagagctgcagacggagccgggcggctgcatcggctacaaggtccgtttc
agcgaccacgtgagcgataacaccatggtcaagctgatgaccgacggtattctgctggcg
gaaatccagcaggatcgcctgctgatgcagtacgacaccatcatcattgacgaagcgcac
gagcgcagcctgaacatcgatttcctgctcggctacctgaaagagctgctgccgcgccgc
ccggatctgaaaatcatcatcacctccgcgaccatcgatccggagcgcttctcgaagcac
ttcaacaatgcgccgattatcgaggtgtcaggtcgcacgtatcccgtggaagtgcgctat
cgcccgattgtggaagaggcggatgataccgagcgcgaccagctgcaggccatcttcgat
gccgttgacgagttgggtaacgaaagcgcgggcgacattctgatcttcatgagcggcgaa
cgcgaaatccgcgataccgccgatgcgctcagcaagcgcgacctgcgccataccgagatc
ctgccgctctacgcccgtctgtcaaacagcgagcagaaccgcgtcttccagccgcacggc
gggcgccgcatcgtcctggcgaccaacgtggcggaaacctcgctgaccgtgccgggaatt
aaatacgttatcgacccgggcacggcgcgcatcagccgctacagctaccgcaccaaggtc
cagcggctgccgattgagccggtctcccaggcgtccgctaaccagcgtaagggccgctgc
ggccgcgtgtcggaagggatctgtattcgtctctattccgaagatgatttcctgtcgcgc
ccggagtttaccgacccggaaattctgcgcaccaacctggcgtccgttatcctgcagatg
accgcgctggggctgggcgacatcgcggcgttcccgttcgtcgaagcgccggataaacgc
aacattcaggacggcgtgcgtctgctggaagagctcggggcgattaccaccgacgagcag
gcgacggtctacaagctgacgccgctgggccgccagctcagtcaattgccggtcgacccg
cgtctggcgcgcatggttctggaagcgcaaaagcacggctgcgtgcgcgaggcgatgatc
atcacctctgcgctctccattcaggacccgcgcgagcgcccgatggacaaacagcaggcg
tctgacgaaaagcaccgccgcttccacgacaaagagtccgatttcctcgccttcgtgaac
ctgtggaactacctcggcgagcagcagaaagcgctttcctcgaaccagttccgccgccag
tgccgcgtggatttcctcaactacctgcgcgtgcgcgagtggcaggatatctacacccag
ctgcgccaggtggtgaaagagctgggcattccggtgaacagcgaaccggcggagtaccgc
gaaatccatatcgcgctgctgaccggcctgctgtcccacattgggatgaaggacgccgag
aagcaggagtataccggcgcgcgcaacgcccgtttcgccatcttcccgggttctggcctt
ttcaagaagccgccgaagtggaccatggtcgcggagctggtggaaaccagccgcctgtgg
ggacgcattgccgcccgtatcgatccggaatgggtggagccggtggcgcagcatctgctt
aagcgctcgtacagtgaaccgcactgggagcgcgcgcagggcgcggtgatggcgaccgaa
aaagtgaccgtttacggcctgccggtggtcgccgcgcgtaaggtcaactacagccagatc
gatccggctctgtgccgcgagctgtttatccgccacgcgctggtggagggtgactggcag
acgcgccacgccttcttccgcgaaaacctgaagctgcgcgcggaagtggaggagcttgag
cacaagtcccgccgccgcgacattctggtggatgatgaagcgctgttcgagttttatgac
cagcgcatcagccatgatgtgatttccgcccgccatttcgacagctggtggaagaaggcc
agcaaagagacgccggacctgctcaactttgaaaagagcatgctgattaaagagggcgcg
gagtcggtcagcaagctcgactacccgaacttctggcatcagggcaacctcaagctgcgt
ctgacctatcagtttgagccaggggcagacgcggacggcgtgaccgtccacattccgctg
ccgctgttaaaccaggttgacgagagcgggttcgagtggcaaatccccggcctgcgccgc
gagctggtgattgcgctgatcaaatccctgccgaaaccggtgcgccgcaactttgtgcct
gcgccaaactacgcggaagcgtttttgggccgcgtcacgccgctggagctgccgctgctg
gacgcgctggagcgtgaattccgccgcatgaccgggacgaccatcgaccgcgacgactgg
aactgggatcaggtgcccgatcacctgaaaatcaccttccgcgtggtggacgataaaaac
aaaaagctgctggaagggcgttcgttgagcgagctgaaagaggcgctgaaaggcaaagtc
caggagacgctctctgcggtggccgacgacggcatcgagcagagcgggctgcacatctgg
agctttggccagcttccggagagctacgaacagaagcgcggcaactataaggtcaaagcc
tggcctgcgctggtggacgagcgcgacagcgtggcaatcaaactgtttgataacccgcag
gaacagcagcagatgatgtggcgcgggctgcgtcgcctgctgctgctcaacatcccgtcg
ccgatcaagtatctgcacgagaagctgccgaacaaggccaagctggggctctactttaac
ccgtacggcaaagtgctggatctgattgacgactgcatctcctgcggcgtggacaaactg
atccacgaggcgggcggtccggtctggacggaagagggctttgcccagctgcatgaaaag
gtgcgcgcggagctgaacgacaccgtggtggacatcgcgaagcaggtggagcagatcctc
accaccgtgttcaatatcaacaagcgcctgaaggggcgcgtggatatgaccatggcgctc
gggctgtcagacgtgaaggcgcagatggccggcctggtttaccgcggctttgtgaccggc
aacggcttcaatcgtctcggcgatacgctgcgttatctgcaggcgattgaaaaacggctg
gagaagatggccatcgacccgcaccgcgaccgcgcgcagatgctgaaagtggagagcgtc
cagcaggcgtggcagcagtggctcaacaaactgccgcctgcccgccgcgacgatgaagac
gtgcaagcgatccgctggatgatcgaggagctgcgcgtcagcttctttgcccagcagctc
ggtacgccgtatccgatttcggataagcgtatcctgcaggcgatggagcagatttcagct
taa
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