Enterobacter sp. ODB01: A4308_00745
Help
Entry
A4308_00745 CDS
T06363
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
end
Enterobacter sp. ODB01
Pathway
end03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
end00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4308_00745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
end03019
]
A4308_00745
03016 Transfer RNA biogenesis [BR:
end03016
]
A4308_00745
Enzymes [BR:
end01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A4308_00745
Messenger RNA biogenesis [BR:
end03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A4308_00745
Transfer RNA biogenesis [BR:
end03016
]
Prokaryotic type
tRNA degradation factors
A4308_00745
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
AMZ75614
LinkDB
All DBs
Position
complement(161642..164086)
Genome browser
AA seq
814 aa
AA seq
DB search
MSQDPFQEREAEKYANPIPSREFIIEHLTKREKPANREELAVELNIEGEEQIEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGFGFLRVEGRKDDLYLSSEQMKMCIH
GDQILAQPLGADRKGRREARVVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYIWPKA
VEDQIESLREEVPEESKVGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPHTPLDNEARSRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
TKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKTLDQA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPSTEAITAFRSVLAELGLELPGGNKPEPRDYAELLESIGDRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAQEQGHKGNTTETG
GYHYSMEEMLQLGQHCSMTERRADEATRDVADWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVKVEAVNMDDRKI
DFSLISSERAPRNVGKTERERAKKGGNGKPGGGKRRQAGKKVNFEPDSAFRGEKKQKPKA
AKKDARSAKKPSAKTQKIAAATKAKRAAKKKQAE
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttccaggaacgcgaagccgaaaaatacgcgaatcctatccccagc
cgcgagttcatcattgaacacttaacaaaacgcgaaaaacccgccaatcgtgaagaactt
gccgttgaattaaatattgaaggtgaagagcaaattgaagcccttcgccgtcgcctgcgt
gccatggagcgcgacgggcaactggtctttacccgccgccagtgctacgcgctgcctgaa
cgcctcgacttgctgaaaggcaccgtgattgggcaccgtgatggctttggcttcctgcgc
gtggaaggccgcaaagatgacctgtatctgtcatctgaacagatgaaaatgtgtatccac
ggcgaccagatcctggcgcagccgctgggtgctgaccgtaaaggtcgccgggaagcgcgc
gtggtgcgcgtactggtgccaaaaaccagccagattgttggccgttacttcactgatgcg
ggtgtgggctttgtggtgccggacgacagccgtctgagctttgacatcctgatcccgcct
gaagaggtgatgggcgcacgcatgggctttgtggttgtggtagaactcactcagcgccca
acgcgtcgcaccaaagcggttggtaaaatcgtggaagtcctgggcgataacatgggcact
ggcatggccgttgatatggcattgcgcacccatgagatcccctacatctggccgaaagcg
gttgaagatcagatcgaaagtctgcgtgaagaagtgccggaagagtccaaagtgggccgc
gtggatctgcgctccctgccgctggtcaccattgatggcgaagatgcccgcgacttcgat
gatgccgtttactgtgagaaaaaacgcggtggcggatggcgtctgtgggtggcgattgcg
gacgtgagctactatgttcgcccgcacaccccgctggataacgaagcgcgcagccgtggt
acctcggtgtatttcccctctcaggtaataccaatgctgccggaagtgctctctaacggc
ctgtgctccctgaacccgcaggttgatcgcctctgtatggtgtgtgagatgaccatctcc
accaaagggcgcttaaccggctacaagttctatgaagcggtcatgagttcccatgcgcgt
ctgacctataccaaggtctggcatatgctgcagggcgaccaggatctgcgcgaacaatac
gcgccgctggtcaagcatattgaagaactgcataacctctacaaaacgctggatcaggca
cgcgaagagcgcggcgggatctcgttcgagagcgaagaagcgaagtttatcttcaacgca
gagcgtcgcattgagcgtatcgagcagacccagcgtaatgatgcgcacaagctgatcgaa
gagtgtatgatcctggcgaacatctcggcagcgcgtttcgttgagaaagccaaagagccg
gcgctgttccgtattcacgataagccgtcaacggaagccatcaccgcgttccgttcagta
ctggcggaactgggtctggagctgcctggcggcaacaagcctgaaccgcgcgattacgcc
gagctgctggagtccattggcgaccgtcctgacgcagaaatgctgcagacgatgctgttg
cgttcgatgaagcaggcgatttacgatccggaaaaccggggacacttcggcctggcgctg
cagtcttacgcgcatttcacctcgccgatccgtcgctatcctgacctctctctgcaccgc
gcgatcaagtatctgctggcgcaggagcagggccataaagggaacactaccgaaaccggc
ggttaccactattcgatggaagagatgctgcagctcggtcagcactgttccatgaccgag
cgtcgtgctgatgaagccacgcgcgacgtagcggactggctgaagtgtgactttatgctg
gaccaggtgggcaacgtctttaaaggcgtgattgccagcgtgaccggctttggtttcttc
gtgcgtctggacgagctatttatcgacggtctggtgcacgtctccagcctggataacgac
tactaccgcttcgaccaggttggtcaacgcctgattggcgaatcgggcggccagacctac
cgtctgggcgaccgtgtggaagtgaaagttgaagccgtgaatatggacgaccgtaaaatc
gacttcagcctcatctccagcgagcgtgcgccgcgtaacgtcggtaaaaccgagcgtgaa
cgggcgaaaaaaggcggaaacggtaaaccgggcggcggtaaacgtcgtcaggcgggtaag
aaggtaaacttcgagccagacagcgcgttccgcggcgagaagaagcaaaagccgaaggcg
gcgaagaaagacgctcgctcagcgaaaaaaccttctgcgaagacgcagaaaatcgctgct
gccaccaaagcaaaacgtgcagcgaagaaaaaacaggcggagtaa
DBGET
integrated database retrieval system
