Enterobacter sp. FY-07: AKI40_0613
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Entry
AKI40_0613 CDS
T04405
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
enf
Enterobacter sp. FY-07
Pathway
enf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
enf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AKI40_0613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
enf03019
]
AKI40_0613
03009 Ribosome biogenesis [BR:
enf03009
]
AKI40_0613
Enzymes [BR:
enf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AKI40_0613
Messenger RNA biogenesis [BR:
enf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AKI40_0613
Ribosome biogenesis [BR:
enf03009
]
Prokaryotic type
rRNA helicases
AKI40_0613
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
DeaD_C
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AMO47037
LinkDB
All DBs
Position
623907..625826
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AA seq
639 aa
AA seq
DB search
MYYMAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKT
AAFSLPLLNNIDPDLRAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV
QLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQI
PEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALV
RFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD
ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLL
RNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSSEEE
MDIETLAAALLKMAQGERPLILPPDAPMRPRREFRERDDRFERRGDRNDRGPRGDRPERG
GEDRPRRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTI
ELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPRERSERRGGGERRGGGFGGERREGGR
GGEGRRFSGERQEGRGFGGERRAPRRDRDDSAPRRRNDA
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
ttgtactacatggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatc
cttgaagcccttaacgatctcggttacgaaaaaccatctccgatccaggctgagtgcatt
ccgcacctgctttctggtcgtgacgtgctgggtatggcccagactggtagtggtaaaacc
gcagcgttttccctgccactgcttaacaacatcgatccggacctgcgtgcgccgcagatc
ctcgtgctcgctccgacccgcgaactggcggttcaggtcgctgaagcgatgaccgatttc
tctaaacatatgcgcggcgtaaacgtggttgctctgtatggcggccagcgttatgacgtg
caattacgcgccctgcgtcaggggccgcagatcgtcgtcggtacgccgggtcgtctgttg
gatcacctgaaacgcggtacgctggatctctctaaactgagcggtctggtactggatgaa
gccgacgaaatgctgcgtatgggctttatcgaagacgtagaaaccatcatggcgcagatc
ccggaaggtcatcagaccgcgctgttctctgcaaccatgccggaagctatccgtcgcatc
acccgccgctttatgaaagagccgcaggaagtgcgcattcagtccagcgttaccacgcgc
ccggacatcagccagagctactggacggtgtatggcatgcgtaaaaatgaagcgttggtt
cgcttcctggaagcggaagattttgatgcggcgatcattttcgtgcgcaccaaaaacgca
acgctggaagtggcggaagcgctggagcgtaacggctataacagcgccgcgctgaacggt
gacatgaaccaggcgctgcgtgagcagacgctggaacgcctgaaagatggtcgtctcgat
atcctgattgcgaccgacgttgcggcgcgtggtctggatgttgaacgcatcagcctggtt
gtcaactatgacatcccgatggattctgaatcctacgttcaccgtattggccgtaccggt
cgtgcgggtcgtgctggtcgcgcgctgctgttcgttgagaaccgcgaacgccgcctgctg
cgcaatatcgaacgtacgatgaagctgaccattccggaagtagagctgccgaacgcagaa
ctgctgggtaaacgccgtttggaaaaatttgccgcaaaagtacagcagcaactggaaagc
agcgatctggaccagtaccgtgcgctgctggcgaaaatccagccttcttctgaagaagag
atggatatcgaaacgctggccgctgcactgctgaaaatggcgcagggcgaacgtccgctg
attctgccgccggatgcgccgatgcgtccgcgtcgcgaattccgtgagcgtgatgaccgt
ttcgaacgccgtggcgatcgtaacgatcgtggcccgcgtggcgaccgtccggaacgtggt
ggtgaagatcgtccgcgtcgtgagcgtcgtgatgttggtgaaatggaactgtaccgcatt
gaagtgggccgtgatgacggtgttgaagttcgtcatatcgttggcgctatcgctaacgaa
ggcgacatcagcagccgctacatcggtaacatcaaactgtttggcacccactccactatc
gagctgccgaaaggcatgccgggcgaagtgcttcagcactttacccgcacgcgtattctg
aacaagccgatgaatatgcaactgctgggcgatgcgcagccgcgtgaacgtagcgaacgt
cgcggtggtggtgagcgtcgtggcggtggtttcggtggcgagcgtcgtgaaggcggtcgc
ggtggtgaaggtcgccgtttcagcggtgagcgtcaggaaggccgtggtttcggtggcgaa
cgtcgtgcaccgcgccgcgatcgtgatgacagcgctccacgtcgtcgtaacgatgcgtaa
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