Enterobacter sp. FY-07: AKI40_2636
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Entry
AKI40_2636 CDS
T04405
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
enf
Enterobacter sp. FY-07
Pathway
enf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
enf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AKI40_2636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
enf03400
]
AKI40_2636
Enzymes [BR:
enf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AKI40_2636
DNA repair and recombination proteins [BR:
enf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AKI40_2636
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AMO49031
LinkDB
All DBs
Position
complement(2647764..2651210)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQYRYSLPTKAGDQRQFGELTGAACATEVAEIIERHAGPVVLIAPDMQNALRLQDEIG
QFTDNLVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPAMQRGVLIVPVNTLMQRVCPH
SYLHGHALMMQKGQRLSRDQLRTQLESAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPF
RLDFFDDEIDSLRLFDTDTQRTLEEVEAINLLPAHEFPTDKTAIELFRSQWRDKFDVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLQPLFSYFPANTLLVNTGSLEASAERFQQETQ
ARFESRGVDPMRPLLPPDALWLRVDALFSELNKWPRIQLKSEKLAEKAAHVNLGYQTLPD
LSVQAQQKSPLDNLRKFLESFSGPVVFSVESEGRREALIELLARIKVAPKRILRLDEATS
TGCWLMIGAAEHGFIDTLRNRALICESDLLGERVARRRQDTRRTINPDTLIRNLAELHDG
QPVVHLEHGVGRYAGMTTLETGGIKNEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGSDAWTRARQKAAEKVRDVAAELLDIYAQRAAKAGFAFKHDREQYQLFCDGFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQVLEQAAEGKIDILIGTHKLLQSDVKL
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAQLVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTPDALKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKDENALEEIKVELIDRFGLLPDAARTLLDIALLRQQAQKLGIRKLEG
NEKGGVIEFNEKNHVNPAWLIGLLQKQPQHFRLDGPTRLKFIQDLGERKTRMDWVRSFMQ
QLAENALA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaataccgttattctctgccgacaaaagcaggcgatcagcgccagtttggc
gaactcaccggtgcagcctgcgccactgaagtggcggaaatcattgaacgccatgcgggt
ccggtcgtgttaatcgcacccgatatgcaaaacgcgctgcgtttgcaagatgaaattggg
caatttaccgacaacctggtgatgaacctcgctgactgggaaacactgccgtacgacagt
ttctcaccgcaccaggagattatctcttcgcgcctgtcgaccctgtatcaactgcccgcg
atgcagcgcggcgtgctgattgtcccggtcaatacgttaatgcagcgcgtttgcccacat
agttacctgcatggccacgcgctgatgatgcaaaaaggccagcgtttgtcgcgcgaccag
ttgcgcactcagcttgaaagcgcgggttaccgccacgtcgatcaggtaatggaacacggt
gaatatgccacccgcggcgccttgttggatctcttcccgatgggcagcgagcaaccgttc
cgcctcgactttttcgatgatgaaatcgacagcttgcgtcttttcgacaccgatacacaa
cgtacgctggaagaagtggaagccattaacttactgcccgcgcatgaattcccgacagac
aaaaccgcgattgagctgttccgcagccagtggcgcgataagtttgacgtcaaacgcgat
gctgagcacatctatcagcaggtcagtaaaggcaccctgcccgcagggatagaatactgg
cagcccttgtttttcagtgagccattacaaccgctgttcagctacttcccggctaacaca
ctgctggtgaacaccggttcgctggaagccagcgccgagcgttttcagcaagagacgcaa
gcacgcttcgagagccgcggtgtcgacccgatgcgcccgctcctgccgccggacgccctg
tggttgcgcgtcgatgcgttattcagcgaactgaataagtggccacgtatccagctcaaa
agcgaaaaactggcggagaaagccgcgcacgtcaacctcggttaccagacgttgccggat
ctctctgtgcaggctcagcaaaaatcgccgttggataacctgcgcaaattccttgagtcc
tttagtggcccggtggtgttctcggtggaaagtgaaggccgccgtgaagcattaattgag
ctgctggcgcgtattaaggttgcgcctaaacggatcctgcgccttgacgaggcaaccagc
actggttgctggctgatgattggcgcggccgaacacggctttatcgatacgctgcgcaac
cgggcgctgatttgcgaaagcgatctgctgggcgaacgcgttgcccgtcgccgtcaggac
acgcgccgcaccattaatccggacacgctgatccgcaaccttgccgagctacacgatggc
cagccagtggtgcatctggagcatggcgtcgggcgttatgccggtatgaccacgctggag
acgggcggcatcaagaatgagtatctgatgctgacctacgccaacgacgccaaactgtat
gttccggtatcgtcactgcatctgatcagccgttacgccggcggtgccgaagagaacgcg
ccgctgcataaactgggcagcgacgcctggacgcgggcacggcaaaaagcggcggaaaaa
gtgcgggacgtcgccgcagagctgctggatatctacgcccagcgcgcagctaaagcgggg
tttgcctttaagcacgatcgcgaacagtatcagctgttctgcgatggcttcccgtttgaa
accacaccggatcaggcgcaagccatcaacgctgtgctcagcgatatgtgtcagccgctg
gcgatggatcgtctggtgtgcggcgatgtgggcttcggtaaaaccgaagtggcaatgcgc
gcagcatttctggcggtggaaaacaataagcaagtggccgtgctggtgccaaccaccctg
cttgcacagcagcattttgataatttccgcgaccgtttcgctaactggccagtgcgcatt
gagatgctttcccgtttccgcagtgccaaagagcaggcacaggttctggaacaggccgca
gaaggcaaaatagatatcctgataggcacgcataaactgctgcaaagcgacgtcaaactg
aaagatctcggtttgttgatcgtggatgaggagcaccgctttggcgtgcgtcataaagag
cgcattaaagcgatgcgcgccgacgtcgacatcctgaccctgacggcaacgcctattccg
cgtacgctcaatatggcaatgagcgggatgcgcgatctgtcgatcatcgccaccccaccg
gcacgtcgactggcggttaaaacctttgtgcgcgagtatgacagtctggtggtgcgtgag
gcgatcctgcgcgaagtgctgcgtggtggccaggtttactacctctataacgacgtggaa
aacatccagaaagccgcagaccggctggcacaacttgtgccagaagcgcgcattgcaatc
ggccacgggcagatgcgtgaacgcgaactggaacgggtgatgaatgatttccaccatcaa
cgtttcaacgtactggtgtgcaccaccattattgaaaccgggatcgatattccgaccgcc
aacaccatcattattgaacgggctgaccacttcgggctggcgcagctgcatcagctacgt
ggtcgtgtggggcgttcgcatcatcaggcctatgcctggttgttaacaccgcatccgaaa
gcgatgacccctgatgcgctgaaacgcctggaagctatcgcttcgctggaagatttgggc
gccggatttgcgctggcgactcacgatctggagatccgcggcgccggtgaactgctgggc
gaagatcagagcggtcagatggaaaccatcggtttctcactctatatggagttactggaa
aacgccgttgatgcgttaaaagcgggacgcgaaccctcactggaagatctcaccagccag
caaacagaggtggaattgcgcatgccttcgctgttgccggatgactttattccggacgtg
aacacacgtttgtcattctataaacgcatcgccagtgcaaaagacgagaatgcgctggaa
gagatcaaagttgagctgattgaccgctttggcctgttgccggatgccgcgcgcacgttg
ctggacatcgctttgctgcgccagcaggcgcagaagctcggcatccgtaagctggagggt
aacgaaaaaggtggggtgattgagtttaatgaaaaaaatcacgtcaacccggcgtggctg
attggtttgttgcagaagcagccgcaacatttccgcctcgacggccctacacggctgaaa
ttcatacaggatcttggcgaacgcaaaacccgcatggactgggtgcgtagctttatgcag
cagttagcggaaaacgcccttgcctga
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