Enterobacter sp. FY-07: AKI40_4523
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Entry
AKI40_4523 CDS
T04405
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
enf
Enterobacter sp. FY-07
Pathway
enf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
enf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AKI40_4523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
enf03019
]
AKI40_4523
03016 Transfer RNA biogenesis [BR:
enf03016
]
AKI40_4523
Enzymes [BR:
enf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AKI40_4523
Messenger RNA biogenesis [BR:
enf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AKI40_4523
Transfer RNA biogenesis [BR:
enf03016
]
Prokaryotic type
tRNA degradation factors
AKI40_4523
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
MetOD2
Motif
Other DBs
NCBI-ProteinID:
AMO50898
LinkDB
All DBs
Position
complement(4620805..4623282)
Genome browser
AA seq
825 aa
AA seq
DB search
MTKITARADNGGTAMSQDPFLERESEKYTNPIPSREFILDHLAKREKPASRDELAVELNI
EGEEQNEALRRRLRAMERDGQLVFTRRQCYALPERLDLLKGVVIGHRDGYGFLRVEGRKD
DLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRILVPKTSQIVGRYFTDAGVGFVV
PDDSRLSFDILIPPEEIMGARMGFVVVVELTQRPTRRTKALGKIVEVLGDNMGTGMAVDM
ALRTHEIPYLWPTEVEKEIAGLKEQVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVFCE
KKRGGGWRLWVAIADVSYYVRHGTALDNEARNRGTSVYFPSQVVPMLPEVLSNGLCSLNP
QVDRLCMVCEMTISAKGRLTGFKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKH
IEELHNLYKVLDQARAERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILA
NISAARFVEKASEPALFRIHDKPSNDAITAFRSVLAELGLELPGGNKPEPRDYAELLESI
ADRPDHEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLL
AKEQGLKGNSTETGGWHYSMEEVLQLGQHCSMTERRADEATREVSDWLKCDFMQDQVGNI
FPGVIASVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQIGQRLIGESGGQTYRLGDRV
QVKVEAVNMDERKIDFSLISSERGPRNVGKTERERSKKGPAGKKVAGKKPPRRQMGKKVN
FEPDSAFRGEPGKGKPKKAKKPSAKTQKIAAATKAKRAAKKKVAQ
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaaattaccgccagagctgacaacggaggaaccgcaatgtcacaagatcctttc
ctcgaacgcgaatctgaaaaatacaccaaccccattcccagccgcgaattcatcctcgat
cacttagcaaaacgtgaaaaacccgccagccgggacgaactggccgttgagttgaacatc
gaaggcgaagaacaaaatgaagcgctacgccgccgtctgcgtgccatggagcgcgacgga
caattggtctttacccgccgccagtgctatgccttaccggaacgcctggacctgctgaaa
ggcgtggtcattggccaccgcgacggctacggcttcttgcgcgtagaagggcgtaaagac
gatctctacctctccagcgaacagatgaaaacctgcatccatggcgatcaggtgctggca
caaccgcttggcgcggatcgcaaaggtcgccgcgaagcgcgcattgtacgtatcctggtg
ccgaaaaccagccagattgttggccgatactttaccgacgcaggcgtgggttttgtggtg
ccggacgacagccggttgagctttgatatcttaatccccccggaagagatcatgggcgct
cgcatgggcttcgtagtggtggtggagctgacgcagcgaccgacccgtcgcaccaaagcg
ctggggaaaatcgtcgaagtgcttggcgataatatgggaaccggtatggcagtggatatg
gcgctgcgcacccatgaaattccctacctgtggccgacagaagttgaaaaagagattgcc
gggctgaaagagcaggtgccggaagaagcaaaagtgggccgcgtggatttacgcgatctg
ccgctcgttaccatcgacggcgaagatgctcgcgactttgatgacgccgtgttctgcgag
aaaaaacgtggcggtggctggcgcttatgggtagcaattgccgatgtgagttactacgtg
cgtcacggcaccgcgctggacaacgaagcacgcaaccgcggcacgtcggtctacttcccg
tcgcaagtggtgccgatgctgccggaagtgctctctaatggtctgtgctctctgaacccg
caggtggatcggttgtgtatggtctgcgaaatgaccatctcagcaaaaggccgtttaacc
ggctttaaattctacgaagcggtgatgagttcgcacgcgcggctgacctataccaaagtg
tggcatatcctgcagggcgatcaggatctgcgcgagcaatatgcgccgctggtgaagcac
attgaagagctgcataacctgtataaagtcctcgaccaggcgcgtgcagaacgtggcggc
atctcgtttgagagcgaagaagcgaagtttatcttcaatgctgagcgtcgcatcgaacgc
attgaacagacccagcgcaacgatgcgcacaaactgattgaagagtgcatgatcctcgcc
aatatctccgccgcgcgctttgtggagaaagccagcgagcctgcgctgttccgtattcac
gataaaccctctaacgacgcgatcacggcgttccgcagtgtgctcgctgagctcggtctg
gaactgcctggcggcaacaaacccgagccgcgcgactatgcggagctgctggagtcgatt
gccgatcgcccggatcatgagatgctgcaaaccatgctgctgcgctctatgaaacaggcg
atctacgatccggaaaaccgcggccactttgggctggcgctgcaatcctacgcacacttt
acttcaccgattcgccgttacccggatctgtcgttgcaccgcgccattaaatatctgctg
gcgaaagagcaggggctgaaaggcaacagcaccgaaaccggcggctggcattacagcatg
gaagaggtgctgcaactgggccagcactgttcgatgaccgaacgtcgcgctgatgaagcc
acgcgtgaagtgtcggactggctgaaatgcgactttatgcaggatcaggtaggcaacatc
ttcccgggtgtgatcgccagcgtgaccggctttggtttctttgtgcgcctggatgatctc
tttattgatggtctggtgcatgtctcttcgctggataatgactactatcgctttgaccag
attggtcagcgtttgattggcgaatccggcgggcagacttaccgtttgggcgaccgcgtg
caggtgaaagtcgaagcggtcaatatggacgagcgtaagatcgacttctcgctgatctcc
agcgaacgcggtccgcgcaatgtcggtaaaaccgagcgtgaacgcagcaagaaaggcccg
gcaggaaaaaaagtcgccgggaaaaaaccgccgcgccgccagatgggcaaaaaggtgaac
tttgagccggacagcgccttccgcggcgaaccggggaaaggcaaaccgaaaaaagccaaa
aaaccgtcggcgaagacgcaaaaaatcgccgccgccaccaaagcaaaacgtgcggcgaaa
aagaaagtcgcgcagtaa
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