Endozoicomonas sp. GU-1: O2T12_03290
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Entry
O2T12_03290 CDS
T08918
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
eng
Endozoicomonas sp. GU-1
Pathway
eng03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eng00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
O2T12_03290 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eng03021
]
O2T12_03290 (rpoB)
03400 DNA repair and recombination proteins [BR:
eng03400
]
O2T12_03290 (rpoB)
Enzymes [BR:
eng01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
O2T12_03290 (rpoB)
Transcription machinery [BR:
eng03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
O2T12_03290 (rpoB)
DNA repair and recombination proteins [BR:
eng03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
O2T12_03290 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
WBA82198
LinkDB
All DBs
Position
816861..820937
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPSVMNVPYLLAIQLDSYHKLLQSDKEPAAREDIGLHAAFKSV
FPIVSYSGNAALEYVSYRLGAPAFDVKECQLRGVTYAVPLRVKVRLIIYDKDSANKAIKD
IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDNDRGKTHSSGKLLYSARV
IPYRGSWLDFEFDPKDLLYVRIDRRRKLPATILLRAIGLSNEEILDNFFDFVEFNIGAEN
VSTEFVADRLRGEAASFDIYDNDGNVIVEQGRRVTARHLRDLQKANIKNLEAPVDYIYGR
VLAKTVIHKSTGEIIVECNTEITPDVYEKLLSAGIKTVETLYINELECGPFMSDTLRADT
TTNRLEALVEIYRMMRPGEPPTQDAAEALFQNLFFSTERYDLSAVGRMKFNRRLGRDEDT
GSGVLDNSDIIDVLRILVDIRNGKGICDDIDHLGNRRVRSVGEMAENQFRVGLVRVERAV
KERLSLAESEGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLATYARTNDYGFLEAPYRRVV
DGQVTEDVDYLSAIEEGEYVIAQASAAMDEKRQLTEELVVVRYRGEATLMSPDKVQYMDV
STKQMVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGMERNVASDSGVC
VVARRGGVIDTVDAARIVVRVNDDEVQPGEAGVDIYNLTKYTRSNQNTCINQRSLVKAGD
QIARGDIMADGPSVDMGELALGQNMRVAFMPWNGYNFEDSILISERVVQEDRFTTIHIQE
LTCVARDTKLGSEEITGDIPNVGESALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTSVKGTVIDVQVFTRDGVEKDSRALSIEKAQLDE
YRKDLNEEFRVVEHDTFARLRGALRDQPVVRAPGLGKGDRISDSYLDGLEHEQWFKLSME
DEALNEMLDLSREQLKERRAQLDERFEDKKKKLQTGDDMAPGVLKIVKVYLAIKRRIQPG
DKMAGRHGNKGVISIIMPVEDMPHDEEGNPVDIVLNPLGVPSRMNVGQVLETHLGAAAKG
LGVKINRMLEAQQSMAELRKFLDEVYNGIPGSSPVEVNAFSDAEVLELARNLRGGVPMAT
AVFDGAKETEIKRLLRLADMNDSGQVKLFDGRTGESFERPVTVGYMYMLKLNHLVDDKMH
ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVTGRTKM
YKNIVDGDHRMEAGMPESFNVLLKEIRSLGIDIELETE
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcatactcgtatacagagaaaaaacgcatccgcaaggacttcggcaagctgccgagt
gtcatgaatgtgccgtatctgctggcgattcagcttgattcatatcacaagctgttgcag
tcagataaagaaccggcagccagagaagatatcgggctgcacgcagccttcaaatctgtc
tttccaatcgtaagttattccggcaatgccgcccttgaatatgttagctacagactgggt
gctcctgcgtttgatgtcaaggaatgccagctcaggggtgtcacttacgcagtacctctg
cgggtcaaggtgcgcctgattatctacgataaagactccgctaacaaggcaatcaaggat
atcaaagagcaggaagtgtacatgggcgaaattccgctcatgaccgataacggtaccttt
gttatcaacggtacagagcgtgttatcgtatcccagctgcatcgctctccgggcgtattc
tttgataatgaccggggtaagacacactcctccggtaagctgctgtattctgcccgtgtt
attccttaccgtggttcatggctggactttgagtttgatccaaaggatctgctgtatgtc
cgtatcgaccgtcgtcgtaagctgcctgccaccatcctgctgagagccatcgggctttcc
aatgaagaaattcttgataatttctttgattttgttgaattcaatattggcgctgaaaat
gtcagcaccgagtttgttgccgatcgtctgagaggcgaggcggccagctttgatatctac
gataacgacggtaatgtgattgtcgaacagggccgccgagtcactgcacgacacctccgc
gacctgcagaaagccaacatcaagaacctggaagcgccggtagattacatctatggccgt
gttctggcaaagacggttattcacaaatcgaccggtgaaatcattgttgagtgcaacact
gaaattacccctgacgtttatgaaaaactgctgtctgccggtatcaaaaccgtagaaacg
ctgtacatcaatgagctggagtgtggtccgttcatgtctgacaccctgcgtgcagatacc
accaccaaccgtctggaagcgctcgttgaaatctaccgcatgatgcgccctggcgagccg
ccaacgcaggatgctgcggaagccctgttccagaacctgttcttctccaccgagcgttat
gacctgtctgccgttggtcgaatgaagttcaaccgtcgtctgggacgtgatgaagatacc
ggttccggtgttctggataactccgacatcattgatgttctgcgcatcctcgttgatatc
cgcaatggtaaagggatctgcgacgatatcgatcacctaggtaaccgtcgtgtacgttcc
gtgggtgaaatggctgagaaccagttccgtgtcggtctggtacgtgttgagcgtgccgtt
aaggaacgtctgagcctggcggaatccgaaggcctgatgcctcaggatctgatcaatgcc
aaaccggtagcggcggcgatcaaggagttcttcggttccagccagctgtcccagtttatg
gaccagaacaacccgctgtccgagattacgcacaagcgtcgtgtatctgcgttgggcccg
ggcggtctgacccgtgagcgtgccggctttgaggtgcgtgacgtacacgcgactcactac
ggtcgtgtctgtccgattgagacgcctgaaggtccaaacatcggtctgatcaactcgctg
gcaacctatgcccgtaccaacgactatggcttcctggaagcgccatatcgtcgcgttgtt
gatggtcaggtcactgaggatgtggattacctgtctgctatcgaagaaggtgaatacgtt
attgcccaggcttctgcggccatggacgaaaaacgacaactgacggaagagctggttgtt
gttcgttaccgtggtgaagccaccctgatgagcccggataaagtccagtacatggacgta
tccaccaagcagatggtatcggttgcggcctctctgattccattccttgagcacgacgac
gccaaccgtgccttgatgggatcgaacatgcaacgtcaggccgtaccaaccctgagagca
gagaagcctctggtgggtaccggtatggagcgcaacgtggcttctgactccggtgtctgt
gtggttgcccgtcgtggcggtgtgatcgataccgttgacgcagcccgtatcgtggtgcgt
gtgaacgatgatgaagtgcagccaggtgaggccggtgttgatatctacaacctgaccaaa
tacacccgttctaaccagaacacctgtattaaccagcgttccctggtgaaggcgggcgat
cagattgcccgtggcgacatcatggcagatggtccgtctgtggacatgggtgaactggcg
ctgggtcagaacatgcgcgtcgcgttcatgccctggaacggttacaactttgaggactcc
atcctcatctctgagcgtgtcgttcaggaagaccgctttaccaccatccacatccaggaa
ctgacctgtgtggcccgtgacaccaagctgggttccgaagagatcactggcgatattccc
aacgttggtgagtctgccctgaacaagctggatgaagccggtatcgtttatgtcggtgca
gaagtaggcgcgggtgacattctggtcggtaaggtgacgccaaaaggtgaaacccagctg
acgccagaagagaaactgctgcgtgccatcttcggtgagaaggcatccgatgttaaggat
acctctctgcgtgtaccgaccagtgtcaaaggtaccgttattgacgttcaggtctttacc
cgtgatggcgtagagaaggactcccgtgcactttctattgaaaaggcgcagctggatgaa
taccgcaaggacctgaatgaagagttccgtgtggttgagcatgacaccttcgcccgtctg
cgcggtgccctgcgtgatcagccagtggttcgcgcaccgggtcttggcaagggtgaccgg
atcagcgacagctatctggatggcctggagcacgagcagtggttcaaactgtccatggaa
gacgaggcactcaatgagatgctggatctgtccagagaacagctgaaagagcgtcgtgcc
cagctggatgagcgcttcgaagacaagaagaagaagctccagactggcgatgacatggct
cctggcgtcctgaagattgtcaaggtctacctggccatcaagcgtcgtatccagcctggt
gacaagatggcgggtcgtcacggtaacaagggtgttatctccatcatcatgccggtagaa
gacatgccgcacgatgaagagggtaatccggttgatatcgtactgaaccctctgggtgta
ccatcgcgaatgaacgttggtcaggtgctggagactcacctgggtgctgcggccaagggc
cttggcgtcaagatcaaccgcatgctggaagctcagcagagcatggcggaactgcgcaag
ttcctggacgaggtttacaacggtattcctggttccagcccggtggaggttaacgccttc
agcgatgccgaagtactggaactggcccgcaacctgcgtggcggtgtcccaatggcaacg
gcggtattcgacggtgccaaggagaccgagatcaagcgcctgctgcgcctggcggacatg
aacgacagtggtcaggtcaagctgtttgacggtcgtaccggcgaatcctttgagcgtccg
gtcaccgttggctacatgtacatgctcaagctgaaccacttggtagacgacaagatgcac
gctcgttctactggttcttactctctggttacccagcagcctctgggtggtaaggcacaa
ttcggtggccagcgtttcggggagatggaggtctgggcactggaagcttacggtgcggcc
tacactctgcaggaaatgctgactgtgaagtccgatgacgtcactggccgtaccaagatg
tacaaaaacatcgtggatggcgaccacagaatggaagccggtatgccggaatccttcaac
gtactgttgaaggaaatccgctcactgggcatcgacatcgaactggaaaccgaataa
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integrated database retrieval system
