Endozoicomonas sp. GU-1: O2T12_08335
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Entry
O2T12_08335 CDS
T08918
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
eng
Endozoicomonas sp. GU-1
Pathway
eng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O2T12_08335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eng03019
]
O2T12_08335
Enzymes [BR:
eng01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O2T12_08335
Messenger RNA biogenesis [BR:
eng03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O2T12_08335
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WBA83109
LinkDB
All DBs
Position
complement(1927011..1928339)
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AA seq
442 aa
AA seq
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MSNNLPFSALGLDELLIQAVNEAGYQNPTPVQAKAIPMALTGRDLMASAQTGTGKTASFT
LPILHRLAQMRASKAIRALVLVPTRELAIQVDNSFQTYGKHTAIKTAAVYGGVDIDDQLQ
VLKEGVDVLVATPGRLVDMINRQHIQLDNLRILVLDEADRMLDLGFRDDIQRIVQNAPTK
RQNLLFSATFSKDIKQLAHEFMRHPVTIELENPNSAANTVSQSFYPVDQQDKPEILSYLI
HGGRWQKVLVFVRTKKAANKVAELLAEDGINAQPIHSDKSQYLRIRTLEDFKDNYFDVLV
ATDVAARGLDIEQLPLVINYDLPKIPQDYVHRIGRTGRAGQKGRAISLVNPEEKKLLAGI
QQLIKKPLEIEPLPYFEDGEVRPAEIDEPAGKTRNKRSKPDARKPGIKQRSGNQSRNGST
RKPSGSAPKKRPAVFSGKKRKS
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgagcaataacctccctttttccgctcttgggctggatgagttgctgattcaggcagtc
aacgaagcgggctaccagaatcccaccccggttcaggccaaagcgattcccatggcttta
actggccgtgacctgatggcatctgcccagaccggcaccggtaaaaccgccagtttcacc
ttgccaatcctgcaccggctggcgcagatgagagccagcaaagccatccgcgccctggtg
ctggtccctacccgggaactggccattcaggttgataatagtttccagacctatggcaag
cacacggctatcaagacagctgccgtctatggtggcgtagatattgacgatcagttgcag
gttctgaaagaaggcgttgatgtcctggtggcgacacccggtcgtctggtggacatgatc
aaccggcagcatatccagctggacaacttgagaatactggtgctggacgaagccgaccgg
atgctggacctgggcttccgtgacgatattcaacgcattgtgcaaaacgcgccgacaaaa
cgtcagaacctgttgttctccgccaccttttccaaagacattaaacagctggcccatgaa
ttcatgcgccatccggtcacgattgaactggaaaaccccaactctgccgctaacaccgtg
tcccagtctttctacccggtggaccagcaggataaaccggagattctcagttatctcatc
catggtggtcgctggcagaaagtgctggtgtttgtccgcaccaaaaaagccgccaacaag
gttgccgagttgctggcagaagacggcatcaatgcccagcccattcacagcgataaaagt
cagtacctgcgtattcgcacactggaagattttaaagataactattttgatgttctggta
gcaacggatgtggccgccagaggcctggatatcgaacaattgccgctggtcatcaattat
gacctgcccaaaattccccaggactacgtgcaccgcatcggccgcaccggccgcgccgga
caaaaaggcagggctatctccctggttaacccggaagagaaaaagttattggccggtatc
cagcagctgatcaaaaaaccactggaaatagaacctctgccctactttgaagatggcgag
gtgcgtcctgctgagattgatgagcccgccggtaaaacccgcaacaagcgcagcaaacct
gacgcccgaaagcctgggataaaacaacgttcgggtaatcaatcacgcaatggcagcacc
agaaaaccttcaggtagtgcgccaaagaaaaggcctgctgttttctccgggaaaaaacgg
aagtcctga
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