Endozoicomonas sp. GU-1: O2T12_18620
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Entry
O2T12_18620 CDS
T08918
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
eng
Endozoicomonas sp. GU-1
Pathway
eng03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eng00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
O2T12_18620 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eng03400
]
O2T12_18620 (sbcB)
Enzymes [BR:
eng01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
O2T12_18620 (sbcB)
DNA repair and recombination proteins [BR:
eng03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
O2T12_18620 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
O2T12_18620 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
O2T12_18620 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
WBA80336
LinkDB
All DBs
Position
complement(4493319..4494782)
Genome browser
AA seq
487 aa
AA seq
DB search
MQSFYFHDYETFGIDPALDWPAQFAGIRTDAELNEVGEPLNIFCKLPEDHLPNPMACLVT
GLTPQKVNEQGTVEPEFIRRIHTEFMVPGTCALGYNTIRFDDEVTRNILYRNFYDPYARE
WQNGNSRWDLIDLVRLTAALRPEGIEWPLREDGCKSFRLEEITAANGLDHGAAHDALSDV
RATIALARLIRQRQPRVFQFYLSHRGKREVAGLLNLVSQQMVVHVSGMFGARRNNLAVVL
PLIDHPVNRNGIVVYDLSVDPAPLLNLSVDEIRRRLFTPVDQLGDGEARIPLKTIHINKC
PAVAPLNVLRAEDQDRLELDLARCEAHRSQLLADNGLAAKLRAVFSESPATKHTDPDQMI
YSGGFFSPADKNEMSRIVSSNPAQLPELGLSFSDKRLEEMLFRYRGRHYFETMDKEDRGL
WQQYCRDRLSGQLHPDNKQLLTLDHFWNELREAQAVAGEDLEKQHILAQLSDYVQGRENT
LANQDFY
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcattttatttccatgactacgaaactttcggtatcgatcctgcccttgactgg
cccgcccagtttgcgggtatccggacggacgcagagttgaatgaggtgggagagccgctg
aatattttctgtaagttgccggaagaccatctgccgaaccctatggcctgtctggtaacc
ggcttgacaccacaaaaggtgaacgagcaggggacagtggagccggaatttattcgtcgt
attcatacggagtttatggtgccaggcacttgtgctctgggctataacactattcgcttt
gatgatgaggtaacccggaacattctctaccggaatttttatgacccctatgcgcgggag
tggcagaatggcaacagtcgctgggatttgatcgatctggtccgattgactgcggctttg
cggccagaaggcattgaatggccgttgcgtgaggatggttgcaaaagcttcaggctggag
gagataactgcggcgaatggtttggatcacggtgcagctcatgatgccttatcggatgtc
cgtgctactattgcgctggcaaggttgattcgccaacggcagcccagggtgttccagttt
tatctgtcccatcgtggtaaacgtgaagtggctgggttattaaatctggtcagccagcag
atggtggtacatgtctccggtatgtttggagcacggcgcaataacctggctgtagtgctg
ccgttgattgatcatccggtaaaccgtaatggtattgtcgtttatgatctgtcggtggat
ccggcacctttgttgaatttgtcggtggatgaaatacgacgaaggctgtttacacccgtt
gatcaattaggcgatggggaagctcgaattccgttaaagaccattcatattaataaatgc
ccggcggttgctcccctgaatgttctcagggccgaagaccaggatcgtcttgaattggac
cttgccaggtgtgaagcgcaccggagccagttgctggcggacaacgggctggccgcaaaa
ctcagggcggtgttttcagagtccccagcgacaaagcacacggatcctgatcagatgatt
tattcgggtggcttcttctcaccggcagacaaaaacgaaatgagccggattgtttcatcc
aaccctgcgcagttacctgaacttggtctttcgttttccgataaacgactggaggagatg
ctgtttcgttatcgtggccgacactattttgaaaccatggataaagaagaccgggggctt
tggcagcaatattgtcgggaccgattgtctgggcagctacatccggacaataaacaacta
ttaacgcttgatcatttctggaacgaattgagagaggctcaggcggtggcaggggaagat
ttggaaaaacagcatatactggcacaattgtctgattatgtgcaggggcgtgagaacact
ctggccaatcaggacttttattaa
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