Endozoicomonas sp. GU-1: O2T12_21065
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Entry
O2T12_21065 CDS
T08918
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
eng
Endozoicomonas sp. GU-1
Pathway
eng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O2T12_21065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eng03019
]
O2T12_21065
03009 Ribosome biogenesis [BR:
eng03009
]
O2T12_21065
Enzymes [BR:
eng01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O2T12_21065
Messenger RNA biogenesis [BR:
eng03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O2T12_21065
Ribosome biogenesis [BR:
eng03009
]
Prokaryotic type
rRNA helicases
O2T12_21065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
AAA_19
Cas3-like_C_2
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
WBA80773
LinkDB
All DBs
Position
complement(5049983..5051791)
Genome browser
AA seq
602 aa
AA seq
DB search
MTDTNNAMTFADLPLSEAVIKAVQDVGYESPSPIQAQSIPHLLEGRDLLGLAQTGTGKTA
AFALPLLSAIDLKQRDPQVLVLTPTRELAIQVAEAFQRYARHMKGFHVLPVYGGQDMRGQ
LRSLQRGAHVIVGTPGRVMDHLRRESLKLDSLKTVVLDEADEMLRMGFVDDIEWIMEQTP
ADRQVALFSATMPYQIRKIADTHLKEPATVEIKAKTATVDTITQKVCMVSGFHKLDALTR
ILEVESFDAMIIFVRTKTATVELAEKLEARGFAAAALNGDMSQALREKVVDRFKKKSLDI
LIATDVAARGLDVERMSHVVNYDIPYDTEAYVHRIGRTGRAGRQGTAILFATHRERRMLR
AIESATRQRIDTMRLPSMSDVRDIRIRQFKEDVVKAMDMGEELDVFREIVAELEQENALS
YEDMAAALCFMAQKERPFPDAKEPEQPRREGRDRGDRGERRRDGERRGERGRERNNDGMV
RYRVELGRDQGINPGDLVGAIANEGKISGQSIGHIRLFDNCSSVYLPEGMDKSVIEALKG
ARIRNRPMELKLWTGDEPQTERRGRRDGGRGRHEGGLREGGARREGGRGGDRRPRRDNNG
NR
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgactgataccaacaacgcaatgacttttgcggacctgcccctgtcggaagcggtaatc
aaggctgttcaggatgtcggctatgagagcccgtcacccatccaggcacaaagtattcct
cacctgctggaaggtcgtgaccttctgggtctggcgcagaccggtaccggtaaaaccgcc
gcatttgcattgccattgctgtcagccattgatttgaagcagcgcgatccgcaggttctg
gtcttaacgccgacccgtgagctggctatacaggtggcagaagcttttcaacgctacgcc
cgtcacatgaaaggattccatgtgttgcctgtttacggtggtcaggatatgcgcggccag
ttgcgcagcctacagcgtggagcccatgtgattgtgggcacgccgggccgggtcatggac
cacctgcgccgtgaaagcctgaagctggatagcctgaaaaccgtggttctggatgaagcg
gatgaaatgctgcgcatgggcttcgtggatgacattgaatggatcatggagcaaacaccc
gctgaccgtcaggtggccctgttttctgccaccatgccttaccagattcgcaaaattgca
gatactcacttaaaagagcctgctacggtggagatcaaagccaaaacggcgacggttgac
accattacccagaaggtctgcatggtcagcggtttccacaagctggatgccctgactcgt
attctggaagtggaatcctttgatgccatgatcattttcgtgcgcaccaaaaccgccacg
gttgagctggcggaaaaactggaagcccgtggttttgctgcggcggcgctgaatggcgat
atgagtcaggcactgcgtgagaaagtggtggatcgcttcaagaaaaaatccctggatatt
ctgattgctaccgacgtagcggccaggggcctggatgttgagcgtatgagccacgtagtg
aactacgatatcccgtacgatacagaagcctacgttcaccgtattggccgtaccggacgt
gctggccgtcagggcactgcgatcctgtttgctacccatcgtgagcgcaggatgcttcgt
gccatcgaaagtgctacacgacagcgtattgataccatgcgtttaccttccatgagtgac
gtgcgtgatattcgtatccgtcagttcaaggaagatgtcgtcaaagcaatggacatgggc
gaagagctggatgtattccgtgagattgttgccgagcttgagcaggaaaatgccctgagc
tatgaagatatggcagcagcgctctgctttatggcccagaaagaacgcccgttcccggat
gccaaagaaccagagcagccccgtcgtgaaggccgtgatcgtggtgatcgtggcgaaaga
cgtcgtgatggcgaaagacgtggtgagcgtggccgtgaacgcaacaatgatggcatggtc
cgttaccgtgtcgaactgggtcgtgaccagggcatcaaccccggtgacctggtgggcgcc
attgccaatgaaggcaaaatttccggacagagtattggccatatccgactgtttgataac
tgctcgtcagtctatctgccagaaggaatggacaagagcgttattgaagccctgaaaggt
gccaggattcgcaaccggccaatggagttgaaactgtggaccggtgacgagcctcaaaca
gagcgccgtggccgacgtgatggtggtcgtggtcgccatgaaggtggtcttcgtgaaggc
ggtgcccgtcgtgaaggtggccgtggcggcgatcgccgcccacgtcgtgataataacggc
aatcgttaa
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