Endozoicomonas sp. GU-1: O2T12_21805
Help
Entry
O2T12_21805 CDS
T08918
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
eng
Endozoicomonas sp. GU-1
Pathway
eng02020
Two-component system
eng02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
eng00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
O2T12_21805
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
O2T12_21805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eng03021
]
O2T12_21805
Transcription machinery [BR:
eng03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
O2T12_21805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
RRP4_S1
HTH_IclR
HTH_38
Motif
Other DBs
NCBI-ProteinID:
WBA80910
LinkDB
All DBs
Position
5217335..5218795
Genome browser
AA seq
486 aa
AA seq
DB search
MKPSLQLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLESEDSQTEDTASS
EGQEELVDLSEKASEPEPQEMAEWSDSIPNELPVDSAWDDVYSSLPASSGDDDYDPLAKS
SAVESLQDHLEWQLDMLPMSDRDRLIGLAIIEAVNPDGYLTCTLDDLFVSLQSQLDDLEI
EEIHVLQHRVQQFDPVGCGSIDLRECLLVQLRQLPPSTPHFNNAEKLLTRYLESLGTRDY
ASIMRHAKLKEDQLREALSLIQSFHPKPGSTIDQTEAEYVVPDISVRKIRERWTVELNSD
ALPKLRINNNYASMVQRANNSRDNVFMKNHLQEARWFLKNLQSRNETLMKVASQIIAYQQ
EFLEKGDEAMKPLVLADIAEAVGMHESTISRVTTQKYMHTPRGVYELKYFFSSHVSTTEG
GECSSTAIRAHIRKLIAEETPRKPLSDNKIAAILGDQGIKVARRTIAKYRESMNIPPSNE
RKQLVP
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaagccttccttacagctcaagatgggccagcagctgaccatgacgccgcagctgcaa
caggccatccggctgctacagctatcgaccctggatcttcagcaggagattcaggaggcc
ctggagtccaaccccatgctggagtccgaggatagccagacagaggacaccgccagcagt
gaaggacaggaagaactcgttgatctgagcgaaaaagcctcagaacctgagcctcaggag
atggcggaatggtcagacagcattcccaatgaactgcccgtggactccgcctgggacgac
gtgtattccagcctgccggccagcagcggtgacgatgattatgaccccctggcaaaatcc
tccgctgtggagtcacttcaggatcacctggaatggcaactggatatgctgcccatgagc
gaccgggaccggctgattggtctggcgatcatcgaagcagttaatccggatggctattta
acctgcacgctggatgacctgtttgtctctcttcaatcccaactggacgatctggagatt
gaagagatccatgtgctgcaacaccgggtacaacaattcgatccggtgggttgtggcagt
attgaccttagagagtgtctgttggttcaacttcgtcagctgccgccctcaacaccccat
ttcaacaatgcggaaaagctgctcacccgttaccttgagtcccttggcacccgtgattat
gccagcatcatgcgtcatgccaaactgaaagaagaccagctgcgagaagccctcagcctg
attcagagcttccacccaaaacccggcagcaccattgatcagacagaagccgaatatgtg
gtaccggatatatccgtccggaaaatcagggaacgctggacggtggaactgaattccgac
gccctgcccaaactgcgcattaataataattatgcgtccatggttcagagagccaataac
agccgcgacaatgtgttcatgaagaaccatctgcaagaagcccgctggtttttgaaaaac
ctgcaaagccgcaatgaaacattgatgaaagtggcaagccagattattgcctatcagcag
gagttcctggaaaaaggggatgaagccatgaaacccctggtgctggcggatattgccgag
gcggtggggatgcatgagtcgacgatatcccgggtaacgactcagaagtacatgcatacc
ccccggggtgtttacgagctgaagtactttttttccagccatgtcagcaccacggaaggg
ggggagtgttcctccacggccattcgggcccatatccgcaaacttattgctgaagagaca
ccgcgcaaacccctcagtgacaataaaattgcggcgattctgggggatcagggcatcaag
gtagcaaggcgcaccattgccaaataccgtgagtccatgaatattccgccatccaatgaa
cgtaagcagttagtgccctag
DBGET
integrated database retrieval system
