Enterobacter sp. PGRG2: QRD42_06175
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Entry
QRD42_06175 CDS
T11208
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
enj Enterobacter sp. PGRG2
Pathway
enj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
enj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QRD42_06175 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
enj03021
]
QRD42_06175 (rpoC)
03400 DNA repair and recombination proteins [BR:
enj03400
]
QRD42_06175 (rpoC)
Enzymes [BR:
enj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QRD42_06175 (rpoC)
Transcription machinery [BR:
enj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QRD42_06175 (rpoC)
DNA repair and recombination proteins [BR:
enj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QRD42_06175 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WJD50551
LinkDB
All DBs
Position
1435779..1440002
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERNQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEKECEQLREELNETNSETKRKKLTKRIKLLEAFVMSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDAQGEFVAKTSLIDTTIGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKTEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGVEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEANSVDSVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIRL
SNAKSVVNSSGKLVVTSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANW
DPHTMPVITEVAGYIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISGGDTLARIPMESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIENAGSSDFLEGEQAEYSRVKIANRELEANGKIAATYARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPA
APQVTAEDASASLAELLNAGLGGSDNE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttattaaagtttctgaaagcgcagactaaaaccgaagagtttgatgcgatc
aaaattgcgctggcctcgccagacatgatccgttcatggtctttcggtgaagttaagaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggccttttctgtgcgcgt
attttcgggccagtaaaagactatgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgtgatctgtgagaagtgcggcgttgaagtgacccagaccaaagtgcgccgtgag
cgcatgggccacatcgaactggcctctccgactgcgcatatctggttcctgaaatctctg
ccgtcccgtatcggcctgctgctggatatgccgctgcgcgatatcgaacgtgttctgtac
ttcgaatcctatgtggttatcgaaggcggtatgaccaatctggaacgtaaccagatcctg
accgaagaacagtatctggacgcgctggaagagttcggtgacgaattcgacgcgaaaatg
ggtgcggaagcgatccaggccctgctgaaaagcatggatctggagaaagagtgcgagcag
ctgcgtgaagagctgaacgaaactaactccgaaaccaagcgtaaaaagctgaccaagcgt
atcaagctgctggaagcgttcgtcatgtctggcaacaagccagagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgctggtaccgctggatggtggtcgtttc
gcaacgtcggatctgaacgatctgtatcgtcgcgttatcaaccgtaacaaccgtctgaaa
cgtctgctggatctggctgcgccggacatcattgtacgtaacgaaaaacgtatgctgcag
gaagcagtagatgccctgctggataacggtcgtcgcggtcgtgcgatcaccggttctaac
aagcgtcctctgaaatctttggccgatatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgttatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcgctggagctgttcaaaccgttc
atctacggcaagctggaactgcgtggtcttgctaccaccatcaaagctgccaagaaaatg
gttgagcgcgaagaagctgtcgtttgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccaacactgcaccgtttgggtatccaggcatttgaaccggta
ctgatcgaaggtaaagcaatccagctgcacccgctggtttgtgcggcttataacgccgac
ttcgatggtgaccagatggcagtacacgttccgctgacgcttgaagctcagctggaagcg
cgtgcgctgatgatgtctaccaacaacattctgtctccggcgaacggcgaaccaatcatc
gttccgtctcaggacgttgtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatttatcgcgctggc
ctggcctctctgcatgcgcgtgtaaaagtgcgtatcaccgaatatgaaaaagatgcacag
ggcgaattcgttgcgaaaaccagcctgattgatacgaccattggtcgtgcgatcctgtgg
atgatcgtaccgaaaggtctgcctttctccatcgtcaaccaggcgctgggcaagaaagcg
atctccaaaatgctgaacacctgttaccgcattctgggcctgaaaccgaccgttatcttt
gctgaccagacgatgtacaccggctttgcttatgcagcgcgttcaggtgcatccgttggt
atcgacgatatggtgatccctgagaagaaaactgaaatcatcagcgaagcggaagcggaa
gttgctgaaattcaggaacagttccagtctggtctggtaactgcgggcgaacgctataac
aaagttatcgatatctgggctgcggcgaacgatcgtgtatctaaagcgatgatggacaac
ctgcaaaccgaaaccgttattaaccgtgacggcgtcgaagagcagcaggtttccttcaac
agcatttacatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagctg
gcaggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccgatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaacggcgaactccggttatctgacgcgtcgtctg
gttgacgttgcgcaggatctggtggttaccgaagacgattgtggcaccctcgaaggtatc
accatgaccccggttatcgagggtggtgatgttaaagagccgctgcgcgatcgcgttctg
ggtcgtgtgaccgctgaagacgtactgaaaccaggtaccgcggacattctggttccacgc
aacacgctgctgcatgagcaatggtgtgacctgctggaagcgaactccgtagacagcgtg
aaagtgcgttccgttgtatcctgtgacaccgactttggtgtatgtgcacactgctatggt
cgtgacctggcgcgtggccacatcatcaacaaaggtgaagcaatcggcgttatcgcggca
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatccgtctc
agcaacgcgaaatcggttgtgaactccagcggtaaactggttgtgacctcccgtaacacc
gagctgaaactgatcgacgaattcggtcgtaccaaagaaagctataaagtgccttacggt
gcggtcatggcgaagggtgatggcgagcaggttgcaggcggcgaaaccgtagcaaactgg
gatccgcacaccatgccggttatcaccgaagtagcgggttatatccgcttcaccgatatg
atcgacggccagacgattactcgtcagaccgacgaactgaccggtctgtcttcgctggtg
gttctggattctgcagaacgtaccgcgggcggtaaagatctgcgtccggcgctgaaaatc
gttgatgccaacggtaacgatgttctgatccctggtaccgatatgccagctcagtacttc
ctgccaggtaaagcgattgtgcagctggaagacggcgtacagatcagcggtggtgacacc
ctggcgcgtattccgatggaatccggcggtactaaagacatcaccggtggtctgccgcgt
gttgctgacctgttcgaagcacgtcgtccgaaagagccggcaatcctggctgaaatcagc
ggcatcatttccttcggtaaagaaaccaaagggaaacgtcgtctggttatcaccccggtt
gatggcagcgagccgtacgaagagatgatcccgaaatggcgtcagctcaacgtgtttgaa
ggtgaacgtgtagaacgtggtgatgtggtttcggatggtccggaagcgccgcacgacatt
ctgcgtcttcgtggtgttcacgccgttacgcgttatatcaccaacgaagtacaggacgtt
taccgtctgcagggcgttaagatcaacgataagcacatcgaagttatcgtgcgtcagatg
ctgcgtaaagccaccatcgagaacgcaggaagctctgacttcctcgaaggtgagcaggct
gaatactctcgcgtcaagatcgctaaccgcgaactggaagcgaacggcaaaatcgcagcg
acctatgctcgcgatctgctgggtatcaccaaagcgtctctggcaaccgagtccttcatc
tccgcggcatcgttccaggagaccactcgtgtgcttaccgaagcagccgttgcgggcaaa
cgcgacgaactgcgcggtctgaaagagaacgttatcgtgggtcgtctgatcccggctggt
accggttacgcgtaccatcaggatcgtatgcgccgtcgtgctgcgggtgaactcccggct
gcaccgcaggtgactgctgaagacgcgtctgccagcctggcagaactgctgaacgcaggc
ctgggcggttctgacaacgagtaa
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