Enterobacter sp. PGRG2: QRD42_06940
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Entry
QRD42_06940 CDS
T11208
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
enj Enterobacter sp. PGRG2
Pathway
enj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
enj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QRD42_06940 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
enj03019
]
QRD42_06940 (rnr)
03016 Transfer RNA biogenesis [BR:
enj03016
]
QRD42_06940 (rnr)
Enzymes [BR:
enj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
QRD42_06940 (rnr)
Messenger RNA biogenesis [BR:
enj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QRD42_06940 (rnr)
Transfer RNA biogenesis [BR:
enj03016
]
Prokaryotic type
tRNA degradation factors
QRD42_06940 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
WJD50690
LinkDB
All DBs
Position
1601159..1603627
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AA seq
822 aa
AA seq
DB search
MSQDPFQDREAEKYANPIPSREFILDHLSKREKPANREELAVELNIEGEEQLEGLRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGKVIGHRDGFGFLRVEGRKDDLYLSSEQMKMCMH
GDIVLAQPLGADRKGRREARIVRVLEPRTGQIVGRYFTDAGVGFVVPDDSRLSFDILVPP
EEVMGARMGFVVVVELTQRPTRRTKAIGKIVEVLGDNMGTSMAVDMALRTHEIPYVWPKA
VEDEIASLSEQVPEAAKSGRVDLRNLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTALDDEAHNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
TKGRLTGYKFYEAVMSSHARLTYTKVWHMLEGDQELRQQYAPLVKHIEELHNLYKTLNQA
REERGGISFESEEAKFIFNAERRIERIELTERNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDRPTNEAITSFRSVLAELGLELPGGSKPEPGDYAALLESIADRPDHEMLQTMLL
RSMKQAIYDPENRGHFGLALQQYAHFTSPIRRYPDLSLHRAIKYLLAKEQGHEGDSTETG
GWHYSVEAMLQLGQHCSMAERRADEATRDVADWLKCDFMQDQVGNTFSGVIASVTGFGFF
VRLNELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVRVEAVSMDERKI
DFTLISSERAPRNVGKTEREKAKKGAPGRNASRRRQVGKKVNFEPDSAFRGEKGKSKAKA
KNPDSAQPKAKKEKKPKAPSAKTQKIAAATKAKRAAKKKVAE
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttccaggaccgcgaagctgaaaagtacgccaaccctattcccagt
cgtgaattcattctcgatcacttatccaaacgcgaaaaacccgctaaccgcgaagaactg
gcggttgaactcaatatcgaaggcgaagaacagcttgaagggctgcgtcgtcgcctgcgc
gccatggagcgcgacgggcaactggtcttcacccgccgccagtgctatgcgctgccggag
cgcctcgacctgctgaaaggcaaggtaatcggtcaccgcgacggcttcggcttcctgcgc
gtggaaggccgtaaagacgatctctatctctcttctgaacagatgaaaatgtgcatgcac
ggcgatatcgtgctggcgcagccgctcggcgctgaccgtaaaggtcgccgcgaagcgcgt
attgtgcgcgtgctggagccgcgtaccgggcagatcgtcggccgctacttcaccgatgcc
ggtgtgggctttgtggtgccggatgacagccgcctgagcttcgacatccttgtgccgccg
gaagaagtcatgggcgcgcgcatgggcttcgtggtggtggttgaactcacccagcgtcct
acccgccgcaccaaagccattggtaaaattgttgaagtgctgggcgataacatgggcacc
agcatggctgtcgacatggcgctgcgcacccacgaaatcccttacgtctggccgaaagcg
gtggaagacgagatcgccagcctcagcgaacaggtgccggaagcggcgaaatcaggccgc
gttgacctgcgtaacctgccgctggtcaccatcgacggcgaagacgcccgcgacttcgac
gatgcggtttactgcgagaaaaaacgtggtggcggctggcgtctgtgggtggccattgcg
gacgtcagctactacgtgcgccctggcaccgcgctggacgacgaagcgcacaaccgcggc
acctcggtctacttcccgtcgcaggtggtgcctatgctgccggaagtgctctccaacggc
ctgtgctcgctcaacccgcaggttgaccgcctctgtatggtctgcgagatgaccatctcc
accaaagggcgcttaaccggctacaaattctatgaagcggtgatgagctcccacgcgcgt
ctgacctacaccaaggtctggcatatgctggaaggcgatcaggagctgcgtcagcagtac
gctccgctggtcaaacacatcgaagagctgcacaacctctacaaaaccctgaaccaggcg
cgcgaagagcgtggcggcatctctttcgagagcgaagaagccaagttcatcttcaacgcg
gaacgccgtattgagcgcatcgagctgactgagcgtaacgacgcccacaagctgatcgaa
gagtgcatgatcctcgccaacatctcggcggcgcgttttgtcgagaaagcgaaagaaccg
gcgctgttccgtattcacgatcgtccgactaacgaagccatcacctccttccgctcggta
ctggctgagctgggcctggagctgccgggcggcagtaagccggagccgggtgactacgcg
gcgctgctggaatccatcgccgatcgtcccgatcatgaaatgctgcaaaccatgctgctg
cgctccatgaaacaggcgatttacgatccggaaaaccgcggtcactttggtctggcgctg
caacagtacgcacacttcacctcgccgatccgtcgttatcccgatctgtcgctacaccgc
gccatcaaatacctgctggcgaaagagcaggggcacgaaggcgacagcaccgaaaccggc
ggctggcactacagcgtggaagcgatgctgcaactcggtcagcactgttctatggccgaa
cgccgtgccgacgaagccacgcgcgacgtcgccgactggctgaagtgtgactttatgcag
gatcaggtgggcaataccttctccggggtgattgccagcgtcaccggctttggtttcttc
gtgcgtctgaacgagctgttcatcgacggtctggtgcacgtgtcctccctcgacaacgac
tactaccgtttcgaccaggttggtcagcgtctgatcggcgaatccggcggccagacctat
cgcctgggcgaccgtgtggaagtgcgtgtggaagcggtcagcatggacgagcgtaaaatc
gacttcacgctgatctccagcgaacgcgcgccgcgtaacgtcggcaaaaccgaacgcgaa
aaagccaaaaaaggcgcgccgggacgtaacgccagccgtcgtcgtcaggtgggcaaaaaa
gtaaacttcgagccggatagcgcattccgtggcgaaaaaggcaaatcaaaagccaaagct
aaaaacccggacagcgcgcagccgaaagcgaagaaagagaaaaagccaaaggcgccttct
gcgaaaacgcaaaaaatcgcggcggcgaccaaagcaaagcgcgcagcgaaaaagaaagtc
gctgaataa
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