Enterobacter sp. PGRG2: QRD42_13070
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Entry
QRD42_13070 CDS
T11208
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
enj Enterobacter sp. PGRG2
Pathway
enj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
enj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QRD42_13070 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
enj03400
]
QRD42_13070 (mfd)
Enzymes [BR:
enj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QRD42_13070 (mfd)
DNA repair and recombination proteins [BR:
enj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QRD42_13070 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WJD48229
LinkDB
All DBs
Position
complement(2947495..2950941)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQFRYSLPSSAGDQRQLGELTGSACATEVAEIVERHTGPVVLIAPDMQNALRLHDEIR
QFTDHLVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPAMQRGVLIMPVNTLMQRVCPH
SFLHGHALVMNKGQRLSRDALRAQLDNAGYRHVDQVMAHGEYATRGALLDLYPMGSEQPY
RIDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDNFDVKRD
AEHIYQQVSKGTLPTGIEYWQPLFFSEPLPALFSYFPANTLIVNTGDLESSAERFQNDTQ
ARYENRGVDPMRPLLPPSRLWLRADELFGALKGWPRIQLKTDKLADKAANTNLGYQTLPD
LAVQAQQKSPLDALRKFIESFSGPVVFSVESEGRREALGELLARIKIAPKRIQRLDEATG
NGRYLIIGAAERGFIDTLRNRALICEGDLLGERVSRRRQDNRRTINPDTLIRNLAELHPG
QPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYAGDAKLYVPVSSLHLISRYAGGAEDNA
PLHKLGSDAWSRARQKAAEKVRDVAAELLDIYAQRAAKSGFAFKHDREQYQLFCEGFPFE
TTPDQAQAINAVLSDMSQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEGKIDILVGTHKLLQSDVKM
RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDDLVVREAMLREILRGGQVYYLYNDVENIQKAAQRLANLVPEARITI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMETIGFSLYMEMLENAVDALKAGREPSLEDLTSQQTEVELRMPALIPDDYIPDV
NTRLSFYKRVASAKSENELDEIKVEMIDRFGLLPDPARTLLEVALLRQQAQHLGIRKIEG
NDKGGTIEFAEKNHVDPVWLIGLLQKQPQHFRLDGPTRLKFFQDLGERKTRIEWVRQFMQ
KLAENAVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaattccgttattccctgccctcaagcgcgggcgaccagcgtcagctgggc
gaacttactggcagcgcctgtgccaccgaagtggctgaaatcgttgaacgtcataccggc
ccggtggtactgatcgcgcccgatatgcaaaacgcgctgcgtctgcacgatgaaatcagg
cagtttaccgatcatctggtgatgaatctggccgactgggaaacgctgccctacgacagc
ttctcgccgcatcaggaaatcatctcctcgcgcctgtcgacgctgtaccagctgcccgcc
atgcagcgcggtgtgctgatcatgccggtcaacaccctgatgcagcgcgtttgcccgcac
agcttcctgcacggtcacgcgctggtgatgaacaaaggccagcggctgtcacgggacgcg
ctgcgcgcgcagctggataacgcgggttaccggcatgtcgatcaggtgatggcgcacggt
gaatatgccacccgcggcgcgctgctggatctctatccgatgggcagcgaacagccctac
cgtattgatttctttgatgatgaaatcgacagtctgcgtctttttgacgccgacacgcag
cgcacgctggaggaagtggaggccatcaatctgctgcctgcccacgaattccccacggat
aaagccgccatcgagctgttccgcagccagtggcgcgataattttgacgtgaagcgcgat
gcggagcacatctatcagcaggtgagcaaaggcaccctgccgaccggtattgaatactgg
cagccgctgttcttcagcgagccgctgccggcgctgttcagctatttcccggcgaatacg
ctgattgtgaataccggcgatctggaaagcagcgcggagcgtttccagaacgacacccag
gcgcgctatgaaaaccgcggcgtcgatccgatgcgaccgctgctgccgccgtcccgcctg
tggctgcgcgctgacgaactgttcggcgcgctgaaaggctggccgcgcattcagctgaaa
accgacaagctggctgacaaagccgccaacaccaatctgggctatcagacgctgccggat
ctggcggtgcaggcgcagcagaaatcgccgctcgacgcgttgcgtaaatttatcgaatcc
ttcagcggcccggtagtgttctcggtggaaagcgaggggcgtcgcgaggcgttaggcgaa
ctgctggcacgcatcaagatcgcgccgaagcgcattcagcgtctggatgaagcgaccggt
aacgggcgttatctgatcattggcgcggcggagcgcggctttatcgacaccctgcgcaac
cgggccttgatctgtgaaggcgatctgctgggcgaacgcgtgtcccgtcgccgccaggat
aatcgccgcaccattaacccggatacgctgatccgtaacctcgccgaactgcatcccggc
cagccggttgtccatctggagcacggcgtcggacgctatgcgggaatgaccaccctggaa
gctggcggcatcaagggcgaatacctgatgctcacctatgccggtgacgccaaactctat
gtgccggtttcgtccctgcatctgattagccgctacgccggtggcgctgaagataatgcc
ccgctgcataaacttggcagcgatgcctggtcacgggcgcggcagaaagcggcggagaaa
gtccgcgatgtggcggcggaactgctggatatttacgcccagcgcgcggcgaaaagcggt
ttcgcgttcaaacacgatcgtgaacagtatcagctgttctgcgaaggtttcccctttgaa
accacgccggatcaggcgcaggcgatcaatgcggtgctcagcgatatgtctcagccgctg
gcgatggatcgtctggtgtgcggcgacgtgggctttggcaaaaccgaagtggcgatgcgc
gccgccttccttgcggtggaaaaccacaagcaggtggccgtgctggtgccgaccaccctg
ctggcgcaacagcactatgataacttccgcgaccgcttcgccaactggccggtgcgcatt
gagatgctctcccgcttccgcagcgccaaagagcaggcgcagatcctggagcaggtcgcc
gagggtaaaattgatattctggtcggcacgcacaagctgctgcaaagcgatgtgaagatg
cgtgacctgggactgcttatcgtcgatgaagagcaccgctttggcgtgcgccataaagaa
cgcattaaagcgatgcgcgccgacgtggatattctgacgctgaccgccacgccgatcccg
cgcacgctgaatatggcgatgagcggcatgcgcgatctgtcgattatcgccaccccgccc
gcccgtcgtctggcggtgaaaaccttcgtgcgcgagtatgacgatctggtggtacgtgaa
gccatgctgcgtgagatcctgcgtggcggccaggtgtattatctttataacgatgtggaa
aacattcagaaggcggcgcaacgtctggcgaatctggtaccggaagcgcgtatcactatc
ggtcacggacagatgcgcgagcgtgagctggagcgcgtaatgaatgatttccatcaccag
cgttttaacgtgctggtgtgcaccaccataatcgaaaccgggatcgacattcccaccgcc
aacactatcatcatcgagcgggccgatcattttggcctggcgcagctgcaccagctgcgc
gggcgcgtcgggcgttcgcatcatcaggcctatgcgtggctgctgacgccgcatccgaaa
gccatgaccaccgatgcgcagaaacgcctcgaagccattgcctcgctggaagatctgggg
gcgggctttgcgctggcgacccacgatctggagatccgcggcgccggggagctgctcggg
gaagatcagagcggtcagatggaaaccatcggcttctcgctgtacatggagatgctggaa
aacgcggtcgatgcgctgaaagccgggcgcgagccttctctggaagatctcaccagccag
cagacggaagtggaactgcgtatgccggcgctgatcccggatgattacattcctgacgtg
aatacgcgcctgtcgttctacaaacgggtggccagtgcgaaaagtgagaacgagctggat
gaaattaaggtggagatgatcgatcgcttcggcctgctgccggatccggcgcgtaccctg
cttgaggtggcgttactgcgtcaacaggcgcagcacctgggcattcgcaagatcgaaggt
aacgacaaaggcggcactattgagttcgccgagaagaatcatgtggatccggtgtggctg
attggtctgctgcaaaagcagccgcagcatttccgcctcgacgggccgacacgactgaag
ttcttccaggatctcggtgagcggaaaacccgtatcgaatgggtgcgtcagtttatgcag
aaactggcggaaaacgccgtcgcctga
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