Enterobacter sp. PGRG2: QRD42_15115
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Entry
QRD42_15115 CDS
T11208
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
enj Enterobacter sp. PGRG2
Brite
KEGG Orthology (KO) [BR:
enj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
enj03019
]
QRD42_15115 (hrpA)
Enzymes [BR:
enj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QRD42_15115 (hrpA)
Messenger RNA biogenesis [BR:
enj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QRD42_15115 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
WHD_HA2
AAA_19
nSTAND3
T2SSE
NACHT
PhoH
nSTAND_NTPase5
ResIII
DUF6145
AAA_16
NTPase_1
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
WJD48607
LinkDB
All DBs
Position
complement(3375724..3379626)
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQNFTFSALNQQLETLMLRDRQRFARRLHGARKVKNPEAQQAIYQTMAQEIEQAAGK
VRQRMAARPDITYPDNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRG
VTGLIGHTQPRRLAARTVASRIAEELKSEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYFKELLPKRPDLKVIITSATIDPERFSRH
FDNAPIIEVSGRTFPVEVRYRPIVEEADDTERDQLQAIFDAVDELGRESAGDILIFMSGE
REIRDTADALNKLSLPHTEVLPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSFRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
QTAYKLTPQGRQLSQLPVDPRLARMVLEAQKLGCVREAMIITSALSIQDPRERPMDRQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNSFRRLCRTEFLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHIAMLTGLLSHIGMKDADKQEFTGARNARFAIFPGSGL
FKKPPKWTMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRSYSEPHWERAQGAVMATE
KVTLYGLPIVSARKVNYSQIDPALSRELFIRHALVEGDWQTRHAFFRDNLKLRAEIEELE
HKSRRRDILVDDETLFEFYDQRISHEVISARHFDSWWKKASRETPDLLNFEKNMLIKEGA
EKVSKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEDSGFEWQIPGLRR
ELIIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDALERELRRMTGVTVDRDAW
QWDQVPDHLKISFRVVDDKNKKLQEGRDLTALKEALKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQQQQMWRGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCISCGVDKLIHEAGGPVWTEEGYAQLHEK
VRAELNDTVVEIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMNNLVYRGFVTG
NGFKRLGDTLRYLNAIEKRLEKLAVDPHRDRAQMLKVESVQQAWQQWLNKLPPARREDDD
VKEIRWMIEELRVSYFAQQLGTSYPISDKRILQAMEQIQP
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacaaaattttactttctccgcccttaaccagcagcttgaaaccttaatg
ctgcgcgacagacaacgcttcgcgcgccgtctgcacggggcgagaaaggttaaaaatcca
gaggcgcaacaggccatttaccagaccatggcgcaggaaattgaacaggctgccggcaaa
gtgcgccagcgcatggccgcgcgccctgacatcacctatccggataatctgccggtcagc
cagaagaagcaggacattctggaagccatccgcgatcaccaggtggtgattgtcgccggg
gagaccggctccggtaaaaccacccagctgccgaaaatctgcatggagctggggcgcggc
gtgaccgggcttatcggccacactcagccacgcagactggcggcacggaccgtggccagc
cgtatcgctgaggagctaaaaagcgagccgggcggctgcattggttataaagtgcgtttc
agcgatcacgtcagcgacaacaccatggtcaagctgatgaccgatggcattctgctggcg
gagatccagcaggaccgcctgttgatgcagtacgacactatcatcatcgatgaagcgcac
gagcgcagcctgaacatcgattttctgctcggctatttcaaagagctgctgccaaaacgc
ccggatctgaaagttatcatcacctcggcgaccatcgatccggaacgcttctcccgccac
tttgataatgcgccgatcattgaagtctcgggccgcacctttccggtggaagtgcgctat
cgcccgattgtggaagaggcggacgataccgagcgcgatcagcttcaggcaattttcgac
gccgtggacgagctgggccgtgaaagcgccggcgacatcctgatttttatgagcggtgag
cgggagatccgcgacaccgccgatgcgctcaacaagctcagtctgccgcatactgaagtg
ctgccgctgtatgcacgtctgtcgaacagcgaacaaaaccgcgtgttccagtctcacagc
gggcgacgcatcgtgctggcgaccaacgtggcagaaacctcgcttaccgtgccgggcatc
aagtatgtcatcgatcccggcacggcgcgtatcagccgctacagcttccgtaccaaagtg
cagcgcctgccgattgaaccgatctcgcaggcgtcggcgaaccagcgtaaaggccgctgc
ggacgcgtttcggaaggtatttgtattcgtctttattcggaagatgatttcctgtcgcgc
ccggaatttaccgatcccgaaattctgcgtactaacctcgcgtcggtcattttacagatg
accgcgctggggctgggggacatcgctgcgttcccgtttgtggaagcgccggacaaacgc
aacattcaggacggtgtgcgcctgctggaagagctgggggcgatcaccaccgatgagcag
caaacggcgtataagctgacgccgcagggccgccagctttcgcaactgccggtggatccg
cgtctggcgcgcatggtgctggaagcgcaaaagcttggctgcgtgcgggaagcgatgatc
atcacctcggccctgtcgattcaggatccgcgcgagcgcccgatggacaggcagcaggcg
tcggacgaaaagcaccgccgtttccacgacaaagagtccgatttcctcgcctttgtgaat
ctgtggaactacctcggcgagcagcaaaaagcgctgtcctcgaacagtttccgccgcctg
tgccgcaccgagttccttaactatctgcgggtacgggaatggcaggatatttacacccag
ctgcgccaggtggtgaaagagctgggcattccggtgaacagcgaaccggcggaataccgc
gaaatccatatcgccatgctgaccgggttgttatcgcatatcggcatgaaggacgccgat
aagcaggaatttaccggcgcacgtaacgcccgtttcgccatcttccccggttccggttta
ttcaaaaagccgccgaagtggaccatggtcgccgagctggtggaaaccagccgcctgtgg
ggacgcatcgccgcgcgtatcgatccggaatgggtcgaaccggtggcgcagcatctgatc
aaacgctcctacagcgaaccgcactgggagcgggcgcagggcgcggtaatggcgacggaa
aaagtcacgctttatgggctgcccatcgtcagcgcgcgcaaggtgaactacagccagatc
gacccggcattgagccgcgagctgtttatccgtcatgcgctggtggaaggcgactggcag
acgcgccacgcgtttttccgcgacaatctgaagctgcgcgcggaaatcgaagagctggag
cataaatcgcgccgccgcgacattctggtggatgatgaaaccctgtttgagttttacgat
cagcgcatcagccatgaggtgatctccgcacgccatttcgacagctggtggaagaaagcc
agccgcgaaacgccggatctgctgaactttgaaaagaacatgctgatcaaagagggcgcg
gaaaaagtcagtaagctcgactatccaaacttctggcatcagggcaacctgaaactgcgc
ctgagctatcagtttgagcctggcgcggatgccgatggcgtaacggtgcacattccgctg
ccgctgttaaaccaggtggaagacagcggttttgagtggcagatcccgggactgcgccgc
gagctgattatcgcgctgatcaaatccctgccgaagccggtacgccgcaactttgtgcct
gcgccgaactatgccgaagcctttttggggcgtgtgacgccgctggagctgccgctgctg
gatgcgctggagcgcgagctgcgccgtatgaccggcgtgaccgttgatcgcgacgcctgg
cagtgggatcaggtgccggatcacctgaagatcagcttccgcgtggtggacgacaagaac
aagaaattgcaggaaggccgcgatctgacggcgctgaaagaggcgctgaaaggcaaagta
caggaaaccctgtcggcggtggccgacgacggtatcgaacagagcgggctgcatatctgg
agttttggtcagctaccggaaagctacgagcaaaaacgcggcaactacaaagtgaaggcg
tggcctgcgctggtggatgagcgcgacagtgtggcgatcaaactgttcgataatccgctg
gagcagcaacagcagatgtggcgcggtctgcgccgtctgttactgctcaatattccgtcg
ccgatcaaatatctgcatgagaagctgcccaacaaagccaagctgggtctctactttaac
ccgtacggcaaagtgctggatctgattgatgactgtatttcctgcggcgtcgataagctg
atccatgaggcgggcggcccggtgtggacggaagagggttatgcgcagctgcacgaaaaa
gtgcgcgctgaacttaacgacaccgtggtggagattgcgaagcaggtggaacagatcctg
accgccgtgttcaatatcaacaagcgcctgaaagggcgggtggatatgaccatggcgctg
gggctgtcggacatcaaagcgcagatgaacaatctggtgtatcgcggttttgtcaccggc
aacggttttaaacgtctgggggacacgctgcgttatctgaatgccattgaaaaacggctg
gagaagctggcagtggatccgcaccgggatcgcgcgcagatgctgaaagtggagagcgta
cagcaggcctggcagcagtggctgaacaagctgccgcccgcccgccgtgaggatgacgat
gtgaaagagatccgctggatgatcgaagagctgcgcgtcagttatttcgcgcagcagctc
ggcacatcgtaccccatttccgataagcgtattttgcaggcgatggagcagatccagccg
taa
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integrated database retrieval system
