Enterobacter sp. AN-K1: LOC22_06105
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Entry
LOC22_06105 CDS
T07994
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
enk
Enterobacter sp. AN-K1
Brite
KEGG Orthology (KO) [BR:
enk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
enk03009
]
LOC22_06105 (rlmD)
Enzymes [BR:
enk01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LOC22_06105 (rlmD)
Ribosome biogenesis [BR:
enk03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LOC22_06105 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
PCMT
RrnaAD
MTS
Cons_hypoth95
Methyltransf_11
Methyltransf_4
TRM5-TYW2_MTfase
UPF0020
Methyltransf_15
Ubie_methyltran
Methyltr_RsmB-F
Methyltransf_12
Methyltransf_23
FtsJ
CMAS
Methyltransf_32
TPMT
PrmA
DUF4770
Motif
Other DBs
NCBI-ProteinID:
UFK54200
LinkDB
All DBs
Position
complement(1269398..1270696)
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AA seq
432 aa
AA seq
DB search
MAQFYSAKRRVTTRQIITVEATDLDPFGQGVARHKGKTLFITGLLPGERADITLTEDKRQ
YARGQVKRRLNDSPERVTPRCPHFGVCGGCQQQHASTELQQKSKSSALARLVGHDVNDII
ADRPWGYRRRARLSLSYQPKTERLEMGFRKAGSSDIVSVTQCPVLAPHLGVLLPDVHHCL
ASLDGVRSLGHVELVLANSGPLMVLRHTAPLSKADREKLERFSHSHELALFLAPQSEILE
QVSGEAPWYASDGLRLTFSPRDFIQVNDGVNQQMVANALAWLDVQPTDRVLDLFCGMGNF
TLPLARRAASVVGVEGVEALVAKGQENAQQNGLQNVTFFHQNLEDDVTRQPWAKQGFDKI
LLDPARAGAPGVMQHIIKLAPERVVYVSCNPATLARDSEALLSGGYQIRRLAMLDMFPHT
GHLESMVLFEHI
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactctgcaaaacgacgcgtgacgacgcgtcagatcataactgttgaa
gccacggacctcgatccttttggacagggggtggcgcgtcacaagggtaagacactgttt
atcacaggtttgctgccaggagaacgcgcagatattacgctgacggaagacaaacgtcag
tatgcgcgcggtcaggtcaagcgccgtcttaatgatagcccggagcgcgtgacgcctcgc
tgcccccattttggcgtctgcggcggctgccagcaacagcatgccagcacagaattacag
caaaaaagtaaaagcagcgcgctggcccgcttggtcggacacgacgtgaatgacatcatt
gccgatcggccctggggctaccgtcgccgcgctcgcctgagcctcagctaccagcccaaa
accgagcggctggagatgggttttcgcaaagctggctccagcgatatcgtctctgtcacg
cagtgccctgttttggcgccccatcttggggtgttgctcccggacgtgcaccactgtctt
gcatcgctggatggcgtgcgttcgctgggccatgtcgaactggtgctggccaacagtggc
ccgctgatggtgctgcgccacaccgcgccgctgtcaaaggcggatcgcgaaaaactggaa
cgcttttcgcattctcatgagcttgcgcttttcctcgcgccgcaaagcgagatacttgag
caggtcagcggagaagcgccctggtatgcgtcagacgggctacgcttaacgttcagcccg
cgggattttatccaggttaacgacggcgtgaaccagcagatggtagcgaacgcgctggcg
tggctggacgtacaacccaccgatcgggtgctcgatctgttctgcggcatggggaacttt
accctgccgctggcgcgcagagcagccagcgtggtcggggtggaaggcgttgaggcgctg
gtggcgaaaggccaggagaacgcccaacagaacggtttgcaaaatgtgacattctttcat
caaaatcttgaggatgatgtcactcggcaaccgtgggctaagcagggctttgataagatc
ctgctcgatccggcgcgcgcaggtgcgccgggcgtgatgcagcatataattaaactcgcg
cctgaacgcgtggtctatgtttcctgtaacccggcgacgcttgcccgtgacagcgaagca
ttattgagcgggggttaccagattcggcgtctggcaatgctggacatgttcccgcacact
ggtcatctggaatcgatggtgttgttcgagcacatctaa
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