Enterobacter sp. AN-K1: LOC22_20855
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Entry
LOC22_20855 CDS
T07994
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
enk
Enterobacter sp. AN-K1
Brite
KEGG Orthology (KO) [BR:
enk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
enk03019
]
LOC22_20855 (hrpA)
Enzymes [BR:
enk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LOC22_20855 (hrpA)
Messenger RNA biogenesis [BR:
enk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LOC22_20855 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
T2SSE
nSTAND3
NACHT
ResIII
AAA_16
NTPase_1
PhoH
SLFN-g3_helicase
AAA_23
Motif
Other DBs
NCBI-ProteinID:
UFK52807
LinkDB
All DBs
Position
4379082..4382984
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEHQKLTFPMLMQKLDSLMLRDKQRFARRLHGVKKVKNPDAQQAIYQEMANEIEQAAGK
VVLREAARPEITYPENLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRG
VKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSKH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGNESSGDILIFMSGE
REIRDTADALSKRDLRHTEILPLYARLSNSEQNRVFQPHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRQCRVDFLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGL
FKKPPKWTMVAELVETSRLWGRIAARIDPEWVEPVAQHLLKRSYSEPHWERGQGAVMATE
KVTVYGLPVVAARKVNYSQIDPALSRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE
HKSRRRDILVDDETLFEFYDQRISHDVISARHFDSWWKKASKEAPNLLNFEKSMLIKEGA
ESVSKLDYPNFWHQGNLKLRLTYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDALEREFRRMTGTTIDRDDW
NWDQVPDHLKITFRVVDDKNKKLLEGRSLTELKEALKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPQEQQQMMWRGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCISCGVDKLIHEAGGPVWTEEGFAQLHEK
VRAELNDTVVEIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDVKAQMAGLVYRGFVTG
NGFKRLGDTLRYLQAIEKRLEKMAVDPHRDRAQMLKVENVQQAWQQWLNKLPPARRDDDD
VREIRWMIEELRVSFFAQQLGTPYPISDKRILQAMEQISG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaccaaaaattgaccttcccgatgctgatgcaaaagcttgattcgctgatg
ctgcgcgataaacagcggtttgcgcgccgtctgcacggcgttaagaaggttaaaaatcct
gatgcacaacaggccatttaccaggagatggccaacgagattgaacaggcggcagggaaa
gttgtgctgcgtgaagccgcacgtccggagattacctatccggaaaatctgcccgtcagc
cagaagaaacaggacattcttgaggccgtacgcgaccaccaggtggtgatcgtcgcgggg
gaaaccggttcaggtaaaaccactcagctgccgaaaatctgcatggaactgggccgcggg
gtgaaagggttgatcggtcacacccagccgcgtcgtctggcggcgcgcaccgtggcgaac
cgtattgcggaagagctgcaaacggagccgggtggctgcatcggctacaaggtgcgattc
agcgaccacgtcagcgataacaccatggttaagctgatgaccgacggtatcctgctggcg
gaaatccagcaggatcgtctgctgatgcagtacgacaccatcatcatcgatgaagcgcac
gagcgcagcctgaacatcgacttcctgctcggctacctgaaagagctgctgccccggcgt
ccggatctgaaaatcatcatcacctccgcgaccatcgacccggagcgcttctcaaaacat
ttcaacaatgcgccgattatcgaggtgtcaggacgcacgtatccggtggaagtgcgctat
cgcccgattgtggaagaggcggacgataccgagcgcgaccagcttcaggccatctttgat
gccgtcgacgagctgggcaacgagagttctggcgacattctgatcttcatgagcggcgag
cgcgagatccgcgataccgccgatgcgctcagcaagcgcgatctgcgccatactgagatc
ctgccgctgtacgcgcgcctgtcgaacagcgagcagaaccgcgtgttccagccgcacagc
gggcgccgcatcgtgctggcgaccaacgtggccgaaacttcgctgaccgtaccgggcatt
aaatacgtgatcgacccgggtacggcgcgcatcagtcgctacagctaccgcaccaaagtt
cagcgcctgccgattgagccggtttcgcaggcgtcggctaatcagcgtaagggccgctgc
ggccgcgtgtcggaagggatctgtattcgtctctattcggaagacgatttcctgtcgcgc
ccggagtttaccgatccggagatcctgcggaccaacctggcatccgttatcctgcaaatg
accgcgctggggctgggcgatatcgccgccttcccgtttgtggaagcgccggataagcgc
aatattcaggacggggtgcggttgctggaagagctgggggccatcaccaccgacgaacag
gcgacggcctacaagctaacgccattgggccgccagcttagccagttgccggtcgacccg
cgtctggcgcgcatggtgctggaggcgcaaaaacacggctgcgtgcgcgaggcgatgatc
atcacctcggcgctctccattcaggatccgcgcgagcgtccgatggataagcagcaggcg
tcggatgaaaaacaccgtcgcttccacgataaagagtccgatttcctcgcctttgtgaac
ctgtggaactaccttggcgagcagcaaaaagcgctctcctcgaaccagttccgccgtcag
tgccgggtggatttcctcaattatctgcgcgtacgcgagtggcaggatatctacacccag
ctgcgccaggtggtgaaagagctgggtataccggtgaacagtgaaccggcggagtaccgc
gaaattcatatcgccctgttgactggcctgctgtctcatatcgggatgaaggatgcggat
aagcaggaatataccggcgcacgcaacgcgcgtttctccatcttcccgggctccggtttg
tttaagaagccgccgaagtggaccatggtcgccgagctggtggaaaccagccgtctgtgg
gggcgtatcgccgcgcgtatcgatccggagtgggttgaaccagtggcgcagcacctgctg
aaacgctcatacagcgagccgcactgggagcgcgggcagggcgcggtgatggcgacggaa
aaagtcaccgtctacggcctgccggtggtggccgcgcgtaaggttaactacagccagatc
gatccggcgttgagtcgcgagctgtttatccgccacgcgctggtggaaggcgactggcag
acgcgtcatgccttcttccgcgaaaacctgaagctgcgcgccgaggtggaagagcttgag
cacaagtcccgccgtcgcgacattctggtggacgacgagacgctgtttgagttttacgat
cagcgcatcagtcacgatgtgatctcggcgcgccatttcgacagctggtggaagaaagcc
agcaaagaggccccgaacctgctcaacttcgaaaagagcatgctgatcaaagagggcgcg
gagtcggtcagcaagctcgattacccgaacttctggcatcagggcaacctcaagctgcgt
ctgacctatcagtttgagccgggcgcggatgccgatggtgtgacggtgcacattccgctg
ccgctgttaaaccaggtggaagagagcgggtttgagtggcaaatccccggcctgcgccgc
gagctggtcattgcattaatcaaatccctgcctaaaccggtgcggcgtaattttgtgcca
gcgccgaactacgccgaagcgtttttaggccgcgtcacgccgctcgagctgccgctgctg
gacgcgctggagcgtgagttccgccgtatgaccgggaccaccatcgaccgcgacgactgg
aactgggatcaggtgcccgatcacctgaaaatcacattccgcgtggtggacgataaaaac
aaaaagctgctcgaaggccgttctctgacggagctgaaagaggcgctgaaaggtaaagtc
caggagacgctctctgcggtggccgatgacggcattgagcagagcgggctgcacatctgg
agctttggtcagcttccggaaagctacgagcagaagcgcgggaactataaggtcaaagcc
tggcccgcgctggtggatgagcgcgacagcgtggcgattaagctctttgacaatccgcag
gagcaacagcagatgatgtggcgcgggctgcgtcgactgcttctgcttaacatcccgtcg
ccgattaagtatctgcacgagaagctgccgaacaaagccaagctggggctctactttaac
ccgtacggtaaggtgctggacctgatcgacgactgcatctcctgcggtgtggataagctg
atccacgaggccggcggtccggtctggacggaagagggctttgctcagcttcatgaaaag
gtgcgcgcggagctgaacgacaccgtggtcgagattgccaaacaggtcgagcagatcctt
accgccgtgttcaatatcaacaagcgcctgaaggggcgggtggatatgaccatggccctg
gggctgtcggacgtcaaggcgcagatggcggggctggtgtatcgcggctttgtcaccggc
aatggctttaagcgtctgggcgatacgctgcgttatttgcaggcgatagagaagcgtctg
gagaaaatggcggtcgatccgcatcgcgatcgtgcgcagatgctgaaagtcgaaaacgtg
cagcaggcctggcagcagtggctcaataaactgccgccggcgcgtcgcgatgacgacgac
gtgcgggagatccgctggatgatcgaggagctgcgcgtcagcttcttcgctcagcagctg
ggaacgccgtatcccatttcggataagcgtatcttgcaggcgatggagcagatttccggc
taa
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