Enterobacter cloacae subsp. dissolvens SDM: A3UG_03965
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Entry
A3UG_03965 CDS
T02159
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
enl
Enterobacter cloacae subsp. dissolvens SDM
Brite
KEGG Orthology (KO) [BR:
enl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
enl03019
]
A3UG_03965
Enzymes [BR:
enl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
A3UG_03965
Messenger RNA biogenesis [BR:
enl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
A3UG_03965
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
CON_HrpB
Helicase_C
HA2_N
Cas3-like_C_2
DUF2732
Motif
Other DBs
NCBI-ProteinID:
AFM58540
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Position
864522..866951
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AA seq
809 aa
AA seq
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MSSLPVAVVLPELLAALQDAPQVLLNAPTGAGKSTWLPLHILNAGIISGKIILLEPRRLA
ARNVAQRLAELLNEKPGETVGYRMRAETCVGPSTRLEVVTEGILTRMLQNDPELTGIGLV
ILDEFHERSLQADLALALLLDVQQGLRDDLRLLIMSATLDNERLQQTLPDAPVITSEGRA
FPVERRYQPLPAHQRFDEAVAIATADLLRQESGSLLLFLPGVGEIQRVQAQLAARVGSDV
MLCPLYGALSLSDQRKAILPAPTGQRKVVLATNIAETSLTIEGIRLVVDSAQERVASFDP
RTGLTKLLTQRISQASMVQRAGRAGRLEPGICLHLISPEQAERAAVQSTPEILQSDLSGL
IVELLQWGCPDPAQLTWLNMPPAVNLAAARALLTQLGALDGDRLSSRGQKMAALGNDPRL
AAMLVAAQGDDEIATAAKLAAILEEPPRGANSDLAQAFSRNQGNWQQRAQQLCKRLNSRG
GTPDADSIAPLLAQAFADRIARRRGLDGRYQLANGMGAMLDSDDALTRHEWLIAPLLLQG
SHSPDARILQAVAVDIDALTRACPQLLQQSDIVEWDDVQGTLKAFRRSQIGKLTMGTKPL
AKPSEEELHQAMLNGIREKGLGVLNWTPEAEQYRIRLHCAARWLPEYAWPAVDDDTLLAS
LDTWLLPQMSGVHSLRALKALDVKVALQNLLDWSLRQRLDSELPGHYTVPTGSRIAIRYH
EDNPPALAVRMQEMFGEATTPSIAEGRVPVVLELLSPAHRPLQITRDLGAFWAGSYREVQ
KEMKGRYPKHVWPDDPANTAPTRRTKKYS
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
gtgtcctcattgccggtcgccgtcgtccttcctgaactgctcgctgccttgcaggatgcc
ccgcaggttttacttaacgcccctacgggtgccggtaagtccacctggttaccgctgcac
atcctcaacgcaggtattatcagcgggaagattatcctgctggagccgcgcagactggcc
gcacgcaacgtggcacagcgcctggcggaactgctgaatgaaaaaccgggcgaaacggtg
ggctaccgtatgcgcgccgaaacctgcgttggcccgtctacacggcttgaagtggtgact
gaagggatcctcacccgtatgctgcaaaacgatccggaactgaccggcatcgggctggtg
attctggatgaattccacgagcgcagcctgcaggcggatctggcgctggcgctgttgctg
gatgtccagcaggggttacgggacgatcttcgactgctcatcatgtcggccacgctggat
aacgaacggctacagcagacgttaccggatgcgccggtcatcacctccgaagggcgtgcg
tttccggttgagcgccgctatcagccgcttcctgcccatcagcgtttcgatgaagcggtg
gctatcgccactgccgacttgctgcgtcaggaatccggttcgctgctgctgtttttgccg
ggcgttggcgaaatccagcgggtgcaggcgcagctcgccgcccgcgtgggcagcgacgta
atgctctgcccgctctacggcgcactgtcgttgagtgaccagcgcaaggccatccttccc
gcgccgacggggcagcgtaaagtggtactggccaccaatattgccgaaaccagtttgacc
atcgaaggcattcgcctggtggtggacagcgcccaggagagagtagccagttttgacccg
cgtaccgggctgacgaaactgctgacgcaacgcatcagccaggcgtcaatggttcagcgt
gctggccgtgccgggcgtcttgagcctggcatctgtttgcatctcatcagcccagaacag
gccgaacgcgcggctgtgcagagcacgccggaaattttacaaagcgatctttcggggctg
atcgtggaactgttgcagtggggctgccccgatcccgcacagttgacctggctcaatatg
cccccggcggtaaacctggcggcggcgcgcgccttactgactcagttaggcgcgctggac
ggcgacaggttatcatcgcgcgggcagaaaatggccgcgctgggtaacgatccccggctg
gcggcgatgctggtggccgcgcagggcgatgatgaaattgccacggcggcaaaactggcg
gctatccttgaggagccgcctcgtggtgcaaattctgatctggcccaggccttttcgcgc
aatcaggggaactggcagcagcgcgcgcagcaactctgtaaacggcttaacagccgtggt
ggtacgccggacgctgacagcattgcgcccctgctggcgcaggcgtttgccgacaggatc
gcgcgtcgtcgcgggctggatggacgttatcaactggcaaacggcatgggtgctatgctg
gacagcgatgacgccctgacgcgccatgaatggctgattgcgccgctcttactgcagggt
agccactctcctgatgcccgtattttgcaggccgtggctgtggatattgatgccctcacg
cgggcgtgtccgcaactgcttcagcagtccgacatcgttgagtgggatgatgtgcagggc
accctgaaggcatttcgtcgtagtcagataggtaaactgaccatggggacgaagccgctg
gcaaagccgtcggaagaggagttgcaccaggcgatgctgaacggtatccgggaaaaagga
ttaggtgttctgaactggacaccggaggccgagcagtaccgtattcgtctgcactgtgcc
gcacgctggttgccggagtatgcctggccggcggtggatgacgacacgttacttgcgtct
ctggacacctggttattgccgcaaatgagcggtgtacactcgctgcgggcgctgaaagcg
cttgatgttaaggtggcgttacagaatttactcgactggtcgttacgtcaacgtctggat
agtgaactgcctgggcattacactgtgccgaccggcagccggattgccattcgttatcac
gaggataatcctccggcactggcggtgcggatgcaggagatgtttggtgaggcgaccacg
ccgtctatcgccgaggggcgcgtgcccgtggtgcttgagctattgtcacctgcgcatcgc
ccgctgcagatcacccgcgatttgggcgcattctgggcggggagctaccgtgaagtgcaa
aaagagatgaaagggcgttatcccaaacatgtctggccggacgatccggcgaatacggcg
ccgacacggcggacgaagaaatattcgtaa
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