Ensifer sp. PDNC004: JVX98_03970
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Entry
JVX98_03970 CDS
T09472
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
enp
Ensifer sp. PDNC004
Pathway
enp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
enp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JVX98_03970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
enp03400
]
JVX98_03970
Enzymes [BR:
enp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
JVX98_03970
DNA repair and recombination proteins [BR:
enp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
JVX98_03970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
QRY64834
LinkDB
All DBs
Position
unnamed_1:902229..903698
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AA seq
489 aa
AA seq
DB search
MTYWVSLAAQGTFDAWRDAARRAISHRIAPEEIDWHGCGGLFDTTPLPERPGVHATRVPQ
AFMNLAKSVIWHSASERLPLLYRALWRLDTGEGEPLSPADPLGRKLLLMQKSVDRDIHKM
HAFVRFREAPVQASRRRFAAWFEPTHNTLEPGSIFFTRRFGDMDWVIATPRLTARFVGGA
LSFGPGGTKPDLPEDAAESLWATYFTNIFNPARIKLNAMRSEMPKKYWHNLPETRLIPQM
LADAEARVQKMHEAGVSTPRLGAAPVSQRYRSAMPQPPKRIDTLEDAAKAAAQCRECRLC
EKATQTVWGEGAADAALMMVGEQPGDREDIEGRPFAGPAGLLLRELLADAGIDARKLWLT
NAVKHFKFSPRGKRRLHRNPDRGEIAHCRFWLGLELALIKPKLTVALGASAAFALTGDDR
SMAERRGKVEPGIHGGPVLITWHPSYILRARDPATATIARRDLARDVENALALSRNVHEE
CAKSSKEQG
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgacctactgggtctcacttgccgcgcagggaacatttgatgcctggcgcgacgctgca
aggcgggctatcagccaccggatcgctccggaagagatcgactggcatggttgtggaggg
ttgttcgacacgacacccctgcccgaacgtcccggcgttcacgcgacgcgggttccacag
gccttcatgaacctggcaaagtcggtaatctggcattcggcatctgaacgcctgccgctg
ctttaccgcgccctttggcgcctcgacacaggcgaaggtgaaccgctttcgcctgcggac
ccgctcggtcgtaaactgttgctgatgcagaaatccgtcgatcgggacattcacaagatg
cacgctttcgtccggttccgggaagcgccggtgcaggcctcccgtcgtcgctttgcagct
tggttcgagccgacgcacaacactctggagccgggaagcatcttttttacacgccgcttc
ggtgacatggattgggtgatcgcgacgccacgcctgaccgcccgatttgttggcggcgcg
ctgagctttggtcccggtggcacaaaacccgacctgccagaagatgcagcagaaagtctt
tgggcgacttatttcaccaacatcttcaaccctgctcggatcaagctcaacgcgatgcga
tcggagatgcctaagaaatattggcacaatctgcccgaaacgcgcctgatcccgcaaatg
ctcgccgacgcggaagcgcgcgttcagaaaatgcacgaggccggcgtctccacaccgcga
ctgggcgcagccccggtttcacagcgctatcggtctgcaatgccgcagccaccaaagcgg
atcgatacattggaggacgctgccaaagccgcggcgcaatgtcgggaatgccgtctttgc
gaaaaggcgacgcagaccgtctggggcgaaggggccgcagacgccgcgctgatgatggta
ggggaacagcccggagacagggaagacatcgaaggccgtccgttcgccggcccggccggg
ctattgttgcgggagttgcttgctgacgctgggattgatgcgcgaaagttgtggctgacg
aacgccgtcaagcacttcaaatttagccctcgtggcaagcggcgcttgcaccgcaatccg
gatcgcggcgaaattgctcactgtcggttctggctaggattggaactcgctttaatcaaa
ccgaagcttacggtggcgctgggcgcctcggcggcctttgcactcacgggtgacgaccgg
tccatggcggaacgccgcggcaaggtggaaccgggcatacacggcggaccggtcctgatt
acatggcatccgtcctatattctgcgcgcgcgcgatccagcgacggccacgatcgcccga
agggacctcgcacgcgacgtggaaaatgccctggcactgagccgcaatgtccacgaagaa
tgtgcaaaaagctccaaggagcaaggataa
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