Ensifer sp. PDNC004: JVX98_08930
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Entry
JVX98_08930 CDS
T09472
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
enp
Ensifer sp. PDNC004
Pathway
enp03420
Nucleotide excision repair
enp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
enp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JVX98_08930
03430 Mismatch repair
JVX98_08930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
enp03400
]
JVX98_08930
Enzymes [BR:
enp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JVX98_08930
DNA repair and recombination proteins [BR:
enp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JVX98_08930
MMR (mismatch excision repair)
Other MMR factors
JVX98_08930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QRY70132
LinkDB
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Position
complement(220406..222871)
Genome browser
AA seq
821 aa
AA seq
DB search
MMSGFDDIPFFDEEPAPRKQQPAPAGVPATGGIAARAMAARDRAQPRPDYLQGLNPEQAE
AVETLDGPVLVLAGAGTGKTRVLTTRIAHILTTGRAFPSQMLAVTFTNKAAREMKERIGV
LVGHAVEGMPWLGTFHSIGVKLLRRHAELVGLRSDFTILDTDDVVRLIKQLIQAEGIDDK
RWPAKQFAGLIDGWKNKGLDPAQIPEGDARAFANGKGRELYAAYQNRLLTLNACDFGDLL
LHPIRIFRMHADVLKDYHDKFRYILVDEYQDTNTAQYMWLRLLAQRPKGVPQNVCCVGDD
DQSIYGWRGAEVDNILRFEKDFPGAKVIKLERNYRSTEHILGAAGHLIAHNEGRLGKTLF
TDRTDPDDEKVQVHAAWDSEEEARAVGEEIEQLQRKGHKLNDMAILVRASFQMREFEDRF
VTLGLNYRVIGGPRFYERLEIRDAMAYFRLVCQPADDLAFERIVNTPKRGLGDTTVRTLH
DYARARDIPMLAAASEIIETDELKPKARKALFDVVTDFRRWQSLLETTVHTELAEQILDE
SGYTAMWQNDKTAEAPGRLENLKELIRSMEAFESLRGFLEHVALVMDAEQNENLDAVSIM
TLHSAKGLEFDTVFLPGWEEGLFPHQRALDEGGRSGLEEERRLAYVGITRAKHRCHIWFV
SNRRIHGLWQSTMPSRFLEELPLAHVDVAENEQSYGGYGRGGYGQSRFDKADPFQNNYST
PGWKRAQQNRSDATRDNWGTRSGHAVERIGYGESGPRGRTIDGELVAKSTATEPSRFSVG
DRVFHMKFGNGNIAAIEGNKLTIDFDRAGQKRVLDGFVEKA
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgatgagtggtttcgacgacattcccttcttcgacgaggagccggcgccgcgcaagcag
cagcccgcccccgcaggtgttccggcaactggcggcattgctgcgcgcgccatggcggcg
cgcgatcgcgcccagccgcgcccggattatctccaaggcctcaacccggaacaggccgaa
gccgtcgagacgctggatggtccagtccttgtgcttgcgggcgccggcaccggcaagacc
cgggtgctgacgacgcgcatcgcccatatcctgacgaccggccgcgccttcccctcgcag
atgctcgcggtgaccttcaccaacaaggcggcgcgcgagatgaaggagcgcatcggcgtg
ctcgtcggccatgcggtcgaaggcatgccctggctcggcaccttccactcgatcggcgtc
aagctcctgcgccgccatgccgaactcgtcggcctgcgctccgatttcaccattctcgac
accgacgacgtggtgcggttgatcaagcagctgatccaggccgaaggcatcgacgacaag
cgctggcccgccaagcagttcgccggcctgatcgacggctggaagaacaaggggctcgat
cccgcccagatccccgagggcgacgcccgcgcctttgccaacggcaagggccgcgagctt
tacgccgcctatcagaaccggctgttgacgctgaacgcctgcgacttcggcgatcttctg
ctgcacccgatccgcatcttccgcatgcacgcggacgtgctgaaggactatcacgacaag
ttccgctacatcctcgtcgacgagtaccaggacaccaacacggcccagtacatgtggctg
cggctgctcgcccagcggccgaagggcgtcccgcagaacgtctgctgtgtcggcgacgac
gaccagtcgatctatggctggcgcggcgcggaggtggacaacatcctgcgcttcgagaag
gatttcccgggcgccaaggtgatcaagctcgagcgcaactatcgctcgaccgaacatatt
ctgggcgccgccggtcacctgatcgcccacaacgagggccggctcggcaagacgctcttc
accgaccgcaccgatccggatgacgagaaggtgcaggtgcacgcggcctgggattccgaa
gaggaagcccgcgccgtcggcgaggaaatcgagcagctgcagcgcaagggccacaagctc
aacgacatggcgatcctggtgcgcgcctccttccagatgcgcgagttcgaagaccgcttc
gtcacgcttggcctcaactaccgcgtcatcggcggcccgcgcttctacgaacgcctcgaa
atccgcgatgccatggcctatttccgcctggtctgccaaccggccgacgatctcgccttc
gagcgcatcgtcaacacgccgaagcgcggccttggcgacaccaccgtgcgcaccctgcac
gactatgcccgcgcccgcgacattccgatgctggcggccgcttcagagatcatcgagacc
gacgagctgaagccgaaggcgcgcaaagccctgttcgacgtcgtcaccgacttccgccgc
tggcagagcctgcttgaaacaaccgtgcataccgagcttgccgagcagatcctcgacgag
agcggctatacggcgatgtggcagaacgacaagacggccgaagcccccggcaggctcgaa
aacctgaaggaactgatccgctcgatggaagcgttcgagagcctgcgcggcttcctcgaa
cacgtggcgctggtcatggatgccgagcagaacgagaacctcgacgccgtctcgatcatg
acgctgcactcggccaagggcctggagttcgacaccgtcttcctgccgggctgggaggaa
ggcctgtttccgcaccagcgcgcgcttgacgaaggcggccgctcgggcctcgaggaagaa
cgccgccttgcctatgtcggcatcacccgcgccaagcatcgctgccacatctggttcgtc
tccaaccgccgcatccacggcctctggcagtcgaccatgccgtcacgcttcctcgaggag
ctgccgcttgcccatgtggacgttgccgaaaacgaacagtcctatggcggctacggtcgc
ggcggctacggccagtcgcgcttcgacaaggccgaccccttccagaacaactattcgacc
cccggctggaagcgcgcgcagcaaaaccgttccgacgccacccgcgacaactggggcacc
cgctccgggcacgcggtcgagcgcatcggctacggcgaaagcggcccgcgcggccgcacc
atcgacggcgagctggtggcgaaatcgacagctaccgaaccctcgcgcttctcggtcggc
gaccgcgtcttccacatgaagttcggcaacggcaacatcgccgccatcgaaggcaacaag
ctcaccatcgacttcgaccgcgccggccagaagcgtgtgctggacgggtttgtcgagaag
gcgtga
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