Ensifer sp. PDNC004: JVX98_13955
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Entry
JVX98_13955 CDS
T09472
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
enp
Ensifer sp. PDNC004
Pathway
enp03410
Base excision repair
enp03430
Mismatch repair
enp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
enp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JVX98_13955 (recJ)
03430 Mismatch repair
JVX98_13955 (recJ)
03440 Homologous recombination
JVX98_13955 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
enp03400
]
JVX98_13955 (recJ)
DNA repair and recombination proteins [BR:
enp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
JVX98_13955 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
JVX98_13955 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JVX98_13955 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QRY69304
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All DBs
Position
complement(1176471..1178273)
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AA seq
600 aa
AA seq
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MEELVDPVQRAFLNVERSVSGQRWVSRLDQAGQNRALAISQVHGYSDLLGRVLAGRGVVL
DDAASFLDPTLRSLMPDPDKLTDCRKAAERLATAIKRREKTVVFGDYDVDGAASSALMAR
FLRHFGIDAEIYIPDRIFEGYGPNPTAIEQLIDNGADLIVTVDCGSTSHESLAVAEKRGV
DVVVIDHHQVGASLPPCHALVNPNREDDLSGQGHLCAAGVVYLVLVNTLRVLRNAGDSRV
ASFDLLAQLDLVALATICDVVPLKGLNRAYVVKGLIAARHMGNVGLSALLRKAAIGGPVT
PYHLGFLVGPRINAGGRIGDAALGSRLLAMEDAAEAEKIAAQLDELNRERQAMEAVMLAE
AEAEVLAEYGTGEGASVIVTARENWHPGIVGLLAARIKEKFRRPTFAIAFDPNGRGTGSG
RSINGFDMGKMVRAAVDGGLLVKGGGHAMAAGLTVERAKLGKLRQFFEERAEAAVRELVA
IQTLKVDGALAASGATLELIDLLEQAGPYGSAHPQPVFAFPQHRLRDSRQVGANHVKVTL
EGQDGSRLDGIAFRATETPLGDFLLSSRGTSIHVAGSVSADLWQGQRRVQLRVTDAAKAF
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggaagaattggtggatccggtacagcgggcctttctgaacgtcgagcggtcggtcagc
ggccagcgatgggtgtcgcgcctcgaccaggcgggtcagaaccgggcgctcgccatcagc
caggtccacggctactccgacctgcttgggcgcgtgcttgccggccgtggcgtcgtcctc
gacgatgccgcaagttttcttgatccgacgcttcgctcgctgatgccggacccggacaaa
ctgacagattgccgcaaggctgcagagcgtctggcaacggccatcaagcgccgggaaaag
acggtggtcttcggtgattatgatgtcgacggtgctgcgtcttcggcgttgatggcgcgt
ttcctgcgccatttcggcatcgatgcggaaatctacattcctgaccggatttttgagggc
tatggcccgaacccgacggcgatcgagcaattgatcgacaacggcgccgatctcatcgtc
accgttgactgtggctcgaccagccatgagtcgcttgccgttgccgagaaacgcggcgtc
gatgtcgtggtcatcgaccaccatcaggtcggcgcgtcgctgccgccctgccatgcgctc
gtcaatcccaaccgtgaggacgatctctcggggcaggggcacctttgtgccgccggcgtc
gtctatctggttctcgtcaataccttgcgtgtgttgcgcaacgccggcgacagccgcgtc
gcttcgttcgacctgctggcccagctcgatctcgtggcgctcgcgaccatctgtgacgtc
gtgccgctcaaggggctgaaccgcgcctacgtcgtcaagggactgatcgcagcgcgccat
atgggcaatgtcgggctttcggccttgctaaggaaggctgcgatcggtggcccggtcacg
ccctatcacctgggctttctcgtcggcccgagaatcaatgccggcggacgcattggcgat
gcggcactcggcagccggctgctggcgatggaagacgccgccgaggcggagaagatcgca
gcccagctcgatgaactcaaccgcgagcggcaggcgatggaagccgtcatgctggccgag
gcggaggctgaggttctggccgaatacggcacgggcgagggcgcttcggtgatcgtcacc
gcgcgcgaaaactggcacccgggcatcgtcgggctgctcgcagcccgcatcaaggaaaaa
ttccgccggccgacctttgccatcgccttcgatcccaatggcagaggaaccggctcgggt
cgctcgatcaacggcttcgacatgggcaagatggtccgcgctgccgtcgacggtggtctg
ctggtaaagggcggtggccatgccatggctgccggcctcaccgtcgagcgcgcgaaactc
ggaaagctccggcaattcttcgaggaacgtgccgaagccgccgtgcgtgagcttgtcgcc
atccagacgctgaaggtcgatggcgcgcttgcagcatccggtgccacgctggaactcatc
gacctcctggagcaggcaggcccctatggctcagcccacccgcagcccgtctttgccttc
ccgcagcatcgcctgcgcgacagccgccaggtcggcgccaaccacgtcaaggtgacgctg
gagggccaggacggcagccgtctcgacgggatagccttccgggcgaccgagacgccgctc
ggcgacttcttgctgtcgagccggggcacgtccattcacgtcgcaggctccgtttcggcg
gatctctggcaaggccagcgtcgcgtgcagcttcgcgtaacggatgccgccaaggcgttt
tga
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