Ensifer sp. PDNC004: JVX98_15445
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Entry
JVX98_15445 CDS
T09472
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
enp
Ensifer sp. PDNC004
Pathway
enp03030
DNA replication
enp03430
Mismatch repair
enp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
enp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JVX98_15445 (dnaE)
03430 Mismatch repair
JVX98_15445 (dnaE)
03440 Homologous recombination
JVX98_15445 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
enp03032
]
JVX98_15445 (dnaE)
03400 DNA repair and recombination proteins [BR:
enp03400
]
JVX98_15445 (dnaE)
Enzymes [BR:
enp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JVX98_15445 (dnaE)
DNA replication proteins [BR:
enp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JVX98_15445 (dnaE)
DNA repair and recombination proteins [BR:
enp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JVX98_15445 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
McdB_C
DUF655
HROB
Motif
Other DBs
NCBI-ProteinID:
QRY69577
LinkDB
All DBs
Position
complement(1472614..1476111)
Genome browser
AA seq
1165 aa
AA seq
DB search
MADDSKAASSEALGTDPQFVHLRVHSAFSLLEGALPLKKVIGKAVADNQPAIGIADTNNL
FAALEFSQKAAGDGLQPITGCQLSIDMEDETEGDRRGHGHQLAKLPSIVLIAATDDGYTR
LVDLVSRAYLSGEGSQATRITRSWLAECGTEGLIALTGASGGPVDVAMKTSSTALAEARL
EALHDLFGDRLYIELQRHGGYDRRHESRMIEFAYKFDIPLVATNEAFFPSPSDYEAHDAL
MAVAHNAMVSDDSRFRLTPDHYLKSRKEMAALFADLPEALENTLEIARRCSFMLKTRGPI
LPRFTGATADPEEAERAESDELRRQAEEGLEDRLARLGMAPGYTQEEYRERLAFELSVIE
RMKFPGYFLIVADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLN
PERVSMPDFDIDFCQDRREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPY
GQVDKICKLVPNNPANPTPLSKAIEEEPRLQEEAEKEPVVARLLDIAQKIEGLYRHASTH
AAGIVIGDRPLSQLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDF
VKQRGIEVDLASIPLDDPKTYEMLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVA
LYRPGPMENIPVYNARKHGEEEVESIHPKIDHLLKETQGVIVYQEQVMQIAQVLSGYSLG
EADLLRRAMGKKIKEEMDKQRARFVDGAVKNEVSKPQADLIFDLLAKFANYGFNKSHAAA
YAIVSYQTAYMKAHYPVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRHF
QTGESRIYYSLAAIKGVGESAVEHIVEVRGDKAFASLEDFCLRIDPKLLNRRVFESLIAA
GAFDCFGYDRAELVGGLDRILGFAQRAQENKTSGQSDMFGAGAATGPERIALPTYTPWLA
SEKLHREFQVLGFYLSAHPLDTYNALLAKMRVQTFGDFAGSVKKGATAGRLAGTVTSKQE
RKTRTGNKMGIIAFSDSSGQFEAVLFSEMLHQYRDLLEPGKSLVMTVAAEERPEGIGLRI
QTLRSLEEESLQLQKALRVYVRDSGPLKSIASHLNTRGDGLVSFVVIKDNGQREIEVELS
EKFRISPEIAAALRSAPGVIDVELV
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgacagcaaggcagcatcgagtgaggcgctcggcacggatccgcaattcgtg
catctgcgcgtccactctgccttctccttgctcgaaggcgccctgccgctgaagaaggtc
atcggcaaggcggtcgccgacaaccagccggcgatcgggatcgccgacaccaacaatctt
ttcgcagcgctggaattctcgcagaaggcagccggtgacgggctgcagccgatcaccggc
tgccagctgtcgattgacatggaagacgagaccgagggggatcgacgcggccatgggcac
cagcttgccaagctgccgtcgatcgtgctcatcgcggcgaccgatgacggctatacgcgc
ctcgtcgatctcgtcagccgcgcctatctcagcggcgagggcagccaggcgacgcgcatc
acccgctcctggcttgccgagtgcggcaccgaggggctgattgcgctgaccggcgcatcc
ggtggtccggtggatgtcgccatgaagacgagctcgacggcgctcgccgaagcgcgcctc
gaagccctgcatgacctcttcggcgatcggctctatatcgagctgcagcggcatggtggc
tacgaccggcggcacgaaagccggatgatcgagtttgcctacaagttcgacattccgctt
gtcgccaccaacgaggccttcttcccgtcgccttccgactacgaggcgcatgacgccctg
atggcggtcgcgcacaatgccatggtttcggacgacagccgcttccgcctgacgccggac
cattatctcaagagccgcaaggaaatggcggcgctgtttgccgacctgcccgaggcgctg
gaaaacacgctcgagatcgcccggcgctgctccttcatgctgaagacccgtgggccgatc
ctgccgcgctttaccggcgcgacggcggatccggaggaggccgagcgcgccgagtcggac
gaactgcgtcgccaggcggaggagggcctcgaagatcgcctcgcgaggctcggcatggcg
cccggctacacccaagaggaataccgcgagcgcctggccttcgaactcagcgtcatcgag
cgcatgaagttccccggttacttcctgatcgttgccgacttcatcaaatgggccaagcag
cacgacatccccgtcgggccgggccgcggctcgggcgccggctcgctcgtcgcctatgcg
ctgacgatcaccgacgtcgatccgatgcgcttctcgctgctgttcgaacgcttcctcaat
cccgagcgcgtctcgatgcccgacttcgacatcgacttctgccaggaccggcgcgaagag
gtgatccgctacgtgcagcgcaagtacggtcgcgaacaggtggcgcagatcatcaccttc
ggttcgctgcaggcgcgtgccgccttgcgcgacgtcggccgcgtgctggaaatgccctat
ggccaggtcgacaagatctgcaagctggtgcccaacaacccggccaacccgacgccgctt
tccaaggcgatagaggaagagccgcgcctgcaggaagaggccgagaaggagccggtggtc
gcccgcctgctcgatatcgcccagaagatcgagggcctctaccgccacgcctcgacccac
gccgccggcatcgtgatcggcgaccggccgctgtcgcagctcgtgccgatgtatcgcgat
ccgcgttccgacatgccggtcacccagttcaacatgaagtgggtcgagcaggccggtctc
gtcaagttcgacttcctcggcctgaagacactgaccgtcctgaaggtcgccgtcgatttc
gtgaagcagcgcggcatcgaggtcgatctggcgagcatcccgctcgacgatccgaagacc
tacgagatgctgtcgcgcggcgaaacggtcggcgtgttccaggtggaaagtgccggcatg
cgcaaggcgctgatcggcatgcggcccgactgcatcgaggacatcatcgcgctggtggcg
ctctatcgcccgggcccgatggagaacatcccggtctataacgcccgcaagcatggtgag
gaggaggtcgagtcgatccatccgaagatcgaccacctgctcaaggaaacccagggcgtt
atcgtttaccaggagcaggtgatgcagatcgcccaggtgctctctggctattcgctcggc
gaggccgaccttctgcgccgcgccatgggtaagaagatcaaggaggagatggacaagcag
cgcgcccgtttcgtcgacggcgccgtcaagaacgaggtgtcgaagccgcaggccgacctg
atcttcgacctgctcgccaagttcgccaactacggcttcaacaagtcgcacgcggcagcc
tacgcgatcgtgtcctatcagaccgcctatatgaaggcgcactatccggtggagttcctg
gcggcgtcgatgacgctcgacatgtccaacaccgaaaaggtcaacgacttccgccaggat
gccaagcgcctgggcatcgaggtgatcgcgccgtcggtgcagacctcgttccggcatttc
cagacgggcgagagccgcatctactactcgcttgcagcgatcaagggcgtcggcgaatcg
gccgtcgagcacatcgtcgaggttcgcggcgacaaggcctttgcaagcctcgaagacttc
tgcctgcggatcgaccccaagcttctcaaccgccgggtcttcgaaagcctgattgccgct
ggcgccttcgattgcttcggctatgaccgggcggaactggtcggcgggcttgatcgcatt
ctcggatttgcccagcgtgcccaggaaaacaagacgagcgggcagagcgatatgttcggc
gcaggtgccgccaccgggccggagcgcattgcgcttccgacctacacgccgtggctcgcc
tcggaaaagctgcaccgcgagttccaggtgcttggcttctatctctcagcccatccgctc
gacacctacaatgcgctgctcgccaagatgcgcgtacaaaccttcggcgatttcgcaggc
tcggtgaagaagggggcgacggccggaaggctcgccggaaccgtgacctcgaagcaggag
cgcaagacacgcacgggcaacaagatgggcatcattgccttctcggattcctccggccag
ttcgaagcggttctgttctccgagatgctgcaccagtatcgagacctgctcgagcccggc
aaatcgctggtcatgacggtggctgccgaagagcggccggaaggcataggcctgcgcatc
cagacgctgcgttcgctcgaagaagaatcgctgcaactgcagaaggcgctgcgcgtctat
gtgcgcgattccggcccgttgaaatcgatcgcttcgcacctcaacaccaggggcgatggt
ctcgtctccttcgtcgtcatcaaggacaacggccagcgcgagatcgaggtggagctgagc
gagaagttccggatttcaccggagatcgctgcagcactgcgctcggcgccgggcgtcatc
gacgtcgaactggtgtaa
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