Ensifer sp. PDNC004: JVX98_20220
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Entry
JVX98_20220 CDS
T09472
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
enp
Ensifer sp. PDNC004
Pathway
enp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
enp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JVX98_20220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
enp03019
]
JVX98_20220
03009 Ribosome biogenesis [BR:
enp03009
]
JVX98_20220
Enzymes [BR:
enp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JVX98_20220
Messenger RNA biogenesis [BR:
enp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JVX98_20220
Ribosome biogenesis [BR:
enp03009
]
Prokaryotic type
rRNA helicases
JVX98_20220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
QRY66709
LinkDB
All DBs
Position
2463765..2465735
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AA seq
656 aa
AA seq
DB search
MTEFEGIAPAIAEALAKRGYNELTPVQQAMRDPELAGRDALVSAQTGSGKTVAFGLALAP
TLLGDERRFGHAGAPLALAIAPTRELALQVKRELEWLYGETGATIASCVGGMDMRTEKRT
LERGAHIVVGTPGRLCDHIRRNSLDISALRAIVLDEADEMLDLGFREDLEFILEESPDDR
RTLMFSATVPKSIATLAKNYQRDAVRISTASEQKQHVDIEYRALTVAPNDRENAIINVLR
YYEARNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQNERTHALQAMRDGRARVCIA
TDVAARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGQKGVSALIVPVNQRRKAERLL
DGGRITATWARPPSADEVSQRDDERLLADTSFAEPIREDEQAIVAALLERHGAEQMAAAF
VRQFRSGRSAPEDLIEVAVGAKPRRDERAPREDRGPREDFGAERADFSDGSWFSLSVGRK
QSAEPRWLIPMLCRHGKLTKRDIGAIRMQQEETFVEMTAEGAERFLSAIGKDKMLEKGIR
VKPLAGAPDLSQQRQEKPSFSRDKPNFSKDKAGFGKKRPYSDDTARGDDRGDFKPKRKFD
KKPGYSEGPAYTEDRPPAKAADKPWANKKKGKPDAGKDGGFKPKTKPKGNAKNRQG
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgactgaattcgaagggatcgcgcctgcgatcgccgaggcgttggcaaaacgcggttac
aacgaattgacgccggttcaacaggcgatgcgcgatccggaactcgccggccgcgacgcc
ctggtttcggcgcagaccggctccggcaagaccgtcgccttcggcctggcgctggcgccg
acgctgcttggcgacgaacgccgcttcgggcatgcgggtgcccccctggcgctcgcaatt
gcaccgacgcgcgaactggcgctgcaggtcaagcgcgagcttgaatggctctacggtgag
accggcgcgacgatcgcttcgtgcgtcggcggcatggacatgcgcaccgagaagcgcacc
ctggagcgcggcgcccacatcgtcgtcggcacgcccggtcgcctttgcgaccacatccgc
cgcaactcgctcgacatctccgcgctgcgcgccatcgtgctcgacgaagccgacgagatg
ctcgacctcggcttccgcgaagacctcgaattcattctcgaagagtctccggatgatcgt
cgcacgctgatgttctcggcgaccgtgccgaagtcgatcgcgacgcttgccaagaactac
cagcgcgacgccgtgcgcatcagcaccgcttccgaacagaagcagcatgtcgacatcgaa
taccgtgcgctgacggttgcgccgaacgaccgcgaaaacgcgatcatcaacgtgctgcgc
tactacgaagcccgcaacgccatcgtcttctgttcgacgcgtgccgccgtcaaccatctg
accgcccgcttcaacaatcgcggcttctcggtggtggcgctttcgggcgagctcagccag
aacgaacgcacccatgcgctgcaggccatgcgcgacggccgcgcccgcgtctgcatcgcc
accgacgtcgctgcccgcggcatcgaccttccgggcctggaactggtcattcacgccgac
ctgcccaccaactccgagacgctgcttcaccgcagcggccgcaccggccgcgccggccag
aagggcgtcagcgccctgatcgttccggtcaaccagcgccgcaaggccgagcgcctgctc
gacggcggccggatcaccgcgacctgggcgcgcccgccatcggccgacgaggtcagccaa
cgtgacgacgagcggctgctcgccgatacgagctttgccgagccgatccgcgaagacgag
caggcgatcgtcgcagcgctgctcgagcgccacggcgccgagcagatggccgccgccttc
gtacgccagttccgttcaggccggtcggctccggaagacctgatcgaggtcgccgtcggc
gccaagccgcgccgcgacgaacgcgcgccgcgcgaagatcgtggaccgcgcgaggatttc
ggcgccgagcgcgcggatttcagcgacggcagctggttctcgctgtccgtcggccgcaag
cagagtgccgagccgcgctggctgatcccgatgctctgccgtcacggcaagctgaccaag
cgcgacatcggtgcgatccgcatgcagcaggaagaaaccttcgtcgaaatgaccgccgag
ggtgccgaacggttcctgtcggcgatcggcaaggacaagatgctggaaaaaggcatccgc
gtgaagccgctcgccggcgcgccggatctctcgcagcaacggcaggaaaagccgagcttc
tccagggacaagccgaatttctccaaggacaaggcgggcttcggcaagaagcgcccctat
tctgacgacacggcccgtggcgacgaccgcggcgacttcaagccgaagcgcaagttcgac
aagaagcccggttattccgaagggccggcctataccgaggaccggccgccggcaaaggcc
gccgacaagccctgggccaacaagaagaagggcaagccggacgcgggcaaggacggtggc
ttcaagcccaagaccaagcccaagggcaatgccaagaaccgccagggctga
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