Ensifer sp. PDNC004: JVX98_23560
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Entry
JVX98_23560 CDS
T09472
Symbol
rtcR
Name
(GenBank) RNA repair transcriptional activator RtcR
KO
K14414
transcriptional regulatory protein RtcR
Organism
enp
Ensifer sp. PDNC004
Brite
KEGG Orthology (KO) [BR:
enp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
enp03000
]
JVX98_23560 (rtcR)
Transcription factors [BR:
enp03000
]
Prokaryotic type
Other transcription factors
Others
JVX98_23560 (rtcR)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
AAA_5
Mg_chelatase
AAA
AAA_16
MCM
NACHT
AAA_22
ATPase_2
AAA_14
NTPase_1
AAA_7
AAA_19
AAA_30
AAA_2
AAA_33
AAA_18
TniB
ABC_tran
T2SSE
AAA_29
TsaE
Motif
Other DBs
NCBI-ProteinID:
QRY67321
LinkDB
All DBs
Position
complement(3159865..3161472)
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AA seq
535 aa
AA seq
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MKRRVVISILGTTLDMGKWEDRWNRWRPNVGLCQQPGLFVDRLELIHDNHASPLARRIIG
DIETVSPATQVRSNTINFRDPWDFSEVYTSLRDFARSYAFDPDAEDYLINITTGTHVAQI
CWFLLTEARIIPARLLQLSPPRDREPGQDFAGTHRIIDLDLSRYDEIAKRFASEREDAAS
FLKSGISTRNVAFNRMIDEIERVAIRSTAPVLLTGPTGAGKSQLARRIYELKKSQRKASG
AFVEVNCATLRGDQAMSTLFGHVKGAFTGAATERAGLLKSADQGVLFLDEIGELGLDEQA
MCLRAIEEKRFLPVGADREVSADFQLLAGTNRDLGAEVAKGRFREDLYARLNLWTFRLPA
LRERREDIEPNLEFELKRFLEREGENITFNKEARERYLAFATGPQGVWSANFRDLSASVT
RMATLAPHGRITTDVVDDEVQRLNAFWHTSSVKDADDATLQDLLGTEAAARLDRFDAVQL
SAVIRACREHPTLSAAGRALFAQSRLEKKSSNDADRLSKYLARFDIRFDDIRRRN
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtcgtgtcgtcatcagcatcctgggaaccacgctcgacatgggcaaatgggag
gaccgctggaaccggtggcggccgaatgtcgggctatgccaacagcccgggcttttcgtc
gaccgactggaactgatccacgacaatcacgcctcgccgctggcccggcggatcatcggc
gacatcgaaaccgtatcgccggccacgcaagtgcgcagcaacaccatcaatttccgagat
ccctgggatttctcggaggtctataccagcctcagggactttgcccgcagctatgccttc
gacccggatgccgaagactatctcatcaacatcaccaccggcacgcacgtggcgcagatc
tgctggttcctgctgaccgaggcccgcatcattcccgcccgactgcttcaactgtcgcca
ccgcgcgaccgcgagccgggccaggatttcgccggcacgcaccggatcatcgacctggac
ctgtcgcgctacgacgagatcgccaaacgctttgcctcggaacgtgaggacgccgcctct
ttcctgaaatcgggcatctcgacccgcaatgtcgccttcaaccggatgatcgacgaaatc
gaacgcgtggcgatccgctcgaccgcgcccgtcttgctgaccggaccgaccggcgccgga
aaatcgcagctcgcgcgccgtatctatgaactcaagaaatcgcagcggaaggccagcggc
gccttcgtcgaagtcaattgtgcaacactcaggggcgaccaggcgatgtcgaccctattc
gggcacgtgaaaggcgccttcacgggggcagccaccgaacgggccggcctgctcaaatcg
gcggaccagggcgtgctcttcctcgacgagatcggcgaactcggcctcgacgaacaggca
atgtgcctgcgggcgatcgaggagaaacgctttctgccggtcggcgcggaccgcgaagtt
tccgcggacttccagcttctcgccggcaccaaccgcgacctcggcgcggaggtcgccaag
gggagattccgcgaagacctctatgcgcgcctcaatctctggacatttcgactgccggcc
ctgcgcgaacgccgggaggacatagagcccaatctggagttcgaactgaaacgctttctc
gaacgcgagggcgagaacatcaccttcaacaaggaagcccgcgaacgctatctggccttt
gcaaccgggcctcagggcgtctggagtgccaatttccgcgacctctcggcctccgtcacc
cggatggcgacgctggcgccacacggacgcatcacgactgatgtcgtcgatgacgaagtc
caacgcctgaacgcgttctggcacacgtcgtcggtcaaggacgcagacgatgcgaccctt
caggacctgctcggcacggaagccgccgcccgcctcgaccgcttcgacgccgtccaactc
tcggccgtgatccgcgcctgccgcgaacacccgacgctcagcgccgccggccgcgccctg
ttcgctcagtcacggctggaaaagaaaagcagcaacgacgccgaccgcctgagcaaatac
ctggcgcgcttcgacatcaggttcgacgatataagaaggcggaactag
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