Enterococcus sp. SB12: RBL01_009710
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Entry
RBL01_009710 CDS
T10850
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
enq Enterococcus sp. SB12
Pathway
enq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
enq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBL01_009710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
enq03019
]
RBL01_009710
Messenger RNA biogenesis [BR:
enq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RBL01_009710
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
XME78582
LinkDB
All DBs
Position
complement(1965567..1967246)
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AA seq
559 aa
AA seq
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MSTIKIIPLGGVRENGKNMYVAEVGEDIFILDCGLKYPENELLGIDVVIPDFTYLEENID
RVAGVFLTHGHADAIGALPYLLSKISVPVFGTELTIELAKLNVSRNEAAKGFKDFHVVDE
HTEIDFGETVVSFFRTTHTIPDSVGINLKTKEGSIVYTGDFKFDQTAIPMYQTDYARLAE
IGKEGVLALLSESANAENPQPVASEAQIADEVFDTIKYWEGRIIVACVASNLQRVQQVLD
AAEKAQRKVVLTGQDFERIIRTAMRLEKLQLPSEDLLVTLKDMKNYDPEELIILETGRMG
EPIKSLQKMANGTHRNVKIEEGDLVYITTTPSIAMETIVAKTEDIIYRAGGTVKLISENM
RVSGHANPNDLQLMINLMKPTYFVPVQGEYRELAAHADLAHAVGMPYKNIYITGRGDVLE
YKNKRMSVAGTTSAENVMIDGLGIGDIGNIVLRDRKILSEDGIFVAVVTISRREKKIISK
PQITSRGFVYVKASRDLMKESSNMIETIVEKHLESNDFEWSKLKQDIRDQLGRYLFEQTK
RRPVILPVIMEATQRRNKK
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaccattaaaattatcccattaggcggcgttcgtgaaaatggaaaaaacatgtat
gtcgcagaagtgggcgaggatatttttattttagattgtgggctaaaatatcctgaaaat
gagttgttggggatcgacgtcgtaattcctgattttacgtatttagaagaaaacattgat
cgtgtagctggtgtctttttaacacatggacatgcagatgcgatcggggcacttccttac
ttgttgtcaaaaatttctgtaccagtattcggaacagagttgacgatcgagttagcaaaa
ttgaatgtcagtcgtaatgaagcagccaaaggatttaaggatttccatgtggtagatgag
catacagaaatcgactttggtgaaacagtagtgagctttttccgtaccactcatacgata
ccagattcagtaggtatcaatctaaaaacaaaagaaggcagtatcgtttatacgggagat
tttaaatttgaccaaacggctatcccaatgtatcaaacagattatgcacgattggcggaa
atcggcaaagaaggagtcttagccttactaagtgaatcggcaaatgcagaaaatcctcag
cctgtagcttctgaagcccaaatagcagatgaagtatttgatacgatcaaatattgggaa
gggcgtatcatcgtcgcttgtgtagcaagtaatttgcaacgagtgcaacaagtattggat
gcagcagaaaaagcacaacgaaaagttgtcttgactggtcaagatttcgaacgaattatt
cgcacagcgatgcgtttagaaaaacttcaattaccaagtgaagatctgcttgttacgttg
aaagacatgaaaaactatgatccagaagaactgatcattttagaaactggccgaatgggt
gaacccatcaagtctctgcaaaaaatggcaaacggtacacaccgtaatgtcaagattgaa
gaaggggatttggtttatatcactactacgccaagcatcgcgatggaaaccatcgtggcg
aaaacggaagatatcatttatcgagctggtggaacagtgaagttgatctctgagaatatg
cgcgtttctggccatgccaatcctaatgacttgcaattaatgatcaatttgatgaaacca
acatattttgtgccagttcaaggagagtatcgtgaattagctgctcatgcagatttggct
catgcagtagggatgccatacaaaaatatctatattactggacgcggagacgtgctggaa
tataagaacaagcgtatgagtgttgcaggaactacaagtgcagaaaatgtaatgattgat
ggattaggcataggtgatatcggaaacattgttttacgtgatcgaaaaatcttgtcagaa
gacgggattttcgtagcggttgttactatcagtcggcgagaaaagaaaatcatttcaaaa
cctcaaattacttcacggggattcgtttacgtaaaagctagccgtgatctgatgaaagaa
agcagcaatatgattgaaacaatcgttgagaaacatttagaaagcaatgattttgagtgg
agcaaattaaagcaagacatccgagatcaattaggccgttacttatttgaacaaacaaaa
cgccgcccagtgatcttgccagtcattatggaagctactcaacgtcgaaataaaaaataa
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