Enterococcus sp. SB12: RBL01_011815
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Entry
RBL01_011815 CDS
T10850
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
enq Enterococcus sp. SB12
Pathway
enq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
enq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RBL01_011815 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
enq03400
]
RBL01_011815 (mfd)
Enzymes [BR:
enq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RBL01_011815 (mfd)
DNA repair and recombination proteins [BR:
enq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RBL01_011815 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
XME78928
LinkDB
All DBs
Position
complement(2365862..2369383)
Genome browser
AA seq
1173 aa
AA seq
DB search
MDIIQLVGKDPQVKEWVSNLEEKMPRQLITGLAGSAKTLLFARAFKKTNKNMIILMPNLY
YANQLAEDLQHVIPQDQIHLFPVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLLP
VASLHKRLPNKKTWLQAQLNWHIGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSII
DIYPLTTTYPVRVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHGIE
QMQKMLEKRLAATTEEADREFLQDYFGQLTSSWQAGVPTEEAKFYSDLLYQESVTILDYF
PSNSLLVVDDYQRIMETNREIEREAAEWQTQKISELRVFSEQTFSADIQKIVQKEKFTTT
FFSLFQKGMGNLRFQAIHNFQYRTMQQFFGQMPLLKTEMDRWRKQKQTVVIFIPTKDRIR
KAEQMLRDEDILVVETEKNALIRGQVQLVEGALQAGFELPQEKIVAITEKEIFQKTTKKQ
TRRQTVTNAERLKSYNELKAGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDDKL
FIPVTQLNLIQKYVASEAKAPRINKLGGSEWAKTKRKVSSKIEDIADDLIKLYAARESEK
GYAFGPDDAYQKEFENAFPYSETDDQLRSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVAL
RAAFKAIKESKQVAFLVPTTILAQQHYETMLERFEGFPVNIGLLSRFRTRKQQKETIEQL
RTGQVDIVVGTHRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPI
PRTLHMSMLGVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRV
ETIEQKVEEIQELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPN
ANTLFVENADYMGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTEL
GSGFKIAMRDLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSRKQGKNSQVEKTTVE
IDLGVDAYLPETYVADQRQKIEIYKRIRELDSQEMLDELEDDLLDRFGEYPEEVAHLLTI
GQIKMDGDRALLETIRKQEAHIVFTLSKVGTKRYSVEQLFEALTATKLKASLGVEKEQMV
IRLTIPNQMEEAVWLQEIQKFVKALREQKYLSA
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggatattattcaattagtcggaaaagatccgcaagtaaaagaatgggtcagcaattta
gaagaaaaaatgcctagacaactaatcacaggattagcgggctcagcgaaaacacttcta
tttgctcgagcgtttaagaaaacaaataaaaacatgattattctgatgccaaatttgtat
tatgcgaatcagttagcagaagatctgcaacatgtgattccgcaagatcagatccattta
tttccagtggatgaagtgctttctgctgaaatggccttttcttctccagaagcgcgaggc
gagagagtcgcaacgcttaacgcacttcaagaaaaaaaagcaggtatctatttgttgcca
gtcgcatctttgcacaagcgactgccgaataagaaaacttggctacaggcgcaattgaat
tggcatattggtgatgagatagacgtggaaaatcttcctcgccaattgactttgatgggc
tatgtacgagaagagatggtcgcaaaaccgggagaattcagtattcgaggaagcattatc
gatatttacccgttaacgacaacctatcctgttcgtgtagaactatttgatgtagagata
gattctatgcggtattttgaagcagaaacacaacgctcaatcgaaaaaacggaagaaatc
tgggtttccccaacgagtgaacaagtctacggaccagaggatctagaacatggaatagag
caaatgcaaaaaatgctagaaaaacggcttgctgcgaccacagaagaagcagaccgcgag
tttttgcaagattacttcggtcagctgacttcaagctggcaagcaggtgtcccgacagaa
gaagcaaaattctactcagatcttctttaccaagaatctgtgacgatcttggattatttc
ccttcaaatagtttactagtcgttgatgattatcagcgaatcatggaaacaaatcgggaa
atcgaaagggaagcggcagaatggcagactcaaaaaatcagcgaattgcgggtgttttct
gagcagacattttcagcagatatacaaaaaatcgtgcagaaggaaaagttcaccacaacc
tttttctcgctctttcaaaaaggaatgggaaatcttcgcttccaagcaatccataatttt
caatatcggacgatgcaacagttcttcggacaaatgccattgctgaaaacagaaatggac
cgttggcgcaagcaaaagcaaactgttgtgatttttattccgacaaaggacaggatacgc
aaagcagaacaaatgcttcgagatgaagacatattagtagtagaaacagaaaaaaatgca
ttgatcagaggacaagtgcaattagttgaaggagctttgcaagctggttttgaacttcct
caagaaaaaatagtagctatcacagaaaaagaaatttttcaaaaaacaacaaaaaaacaa
acgagacgtcaaacagtaacaaacgcagagcgattgaaaagctataatgaattaaaagca
ggagattacgttgtccatgccaatcatggtatcgggaaatacatcgggatggaaacgcta
gaagtagatggcgttcaccaagactatatgactattttgtaccaaaacgacgataaactg
tttattcctgttactcaactgaacctgatccaaaaatatgtcgcctctgaagccaaagcg
cctcgcatcaataagctaggcggaagtgaatgggcgaaaaccaagcgaaaagtctcttca
aaaatcgaggatatcgctgacgatctaatcaaattatatgccgcaagagagtcagaaaaa
ggatatgcttttggacctgatgacgcctaccaaaaagaattcgaaaatgccttcccctac
tctgaaactgatgaccagttgagaagtgcagcggagatcaaacgggatatggaaaaagaa
aaaccaatggatcgactactcgtaggtgatgttggttatgggaaaacagaagtagcgctt
cgagcggcctttaaagcgataaaggaaagcaaacaagtagcctttttagttccaacaacg
atcttggcacagcagcactatgaaacgatgctggaaagatttgaaggcttccccgtaaat
atcgggctattaagtcgtttcagaacaagaaagcaacaaaaagaaaccatcgaacaactg
cgtacaggtcaagttgatattgttgtagggacccaccgaattttgtcaaaagatattgaa
tttagcgatttgggtctactgatcattgacgaagaacaacgttttggtgtaaaacataag
gaacgattgaaacagttacgtgcacaagtggatgttttgactctgactgcaacaccgatt
ccgagaactttgcatatgtcgatgttaggcgtgcgggatctttcagtaatcgaaacaccg
cctgcgaatcgttatccgatccaaacatatgttatggaaaaaaatcctggggctattcgc
gaagcaatccatcgagaaatgggacgaggtggacaagtattctatttatataatcgggta
gaaacgatcgaacaaaaagtagaagaaatccaagaactcgttccggaagcacggatcggt
tatgctcatgggcaaatgacagaggcgcaattagaaaatacgctttttgaatttattgaa
ggtcagtatgatgttcttgtcactacaaccatcattgaaacaggagtagatatcccgaac
gcaaatacgttgttcgttgagaacgctgattatatgggattatccacgttataccaattg
cgagggcgggtaggaagaagcagccgtgtcgcatatgcttactttatgtatgagcagcag
aagatccttaacgaagtcagtgaaaaacgtcttcaggcaatcaaagattttacagaactg
ggatctggattcaagattgcgatgcgggatctttccattcgcggtgcaggtaatctctta
ggtgctcagcagcatggatttattgatgcagtcggtttcgatatgtattctcaaatgcta
agcgaagctgtttctcgtaaacaaggaaagaatagtcaagtggagaagaccactgttgag
atcgacctcggtgtcgatgcgtatctacctgaaacatacgtggcagatcaacggcagaaa
atcgagatctataaacgaattcgtgaacttgattcgcaagaaatgctagatgaactagaa
gatgatctgctcgaccgttttggagaatatccagaagaagtagcacatctcttgacaatt
gggcagatcaaaatggatggcgatcgagcgctcctagaaacgataaggaaacaggaggcg
catatagtctttactctaagtaaagttggaacaaaacgctatagtgtggaacagttattc
gaagcactgacagcgacaaaactaaaagccagtctaggcgttgaaaaagaacagatggtg
atacgcttgacgatccccaaccaaatggaagaagcagtatggcttcaggaaatccaaaag
tttgtcaaagcgttgcgtgagcaaaaatatctgtcagcgtag
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