Enterobacter sp. DSM 30060: HWQ15_04710
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Entry
HWQ15_04710 CDS
T07983
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ens
Enterobacter sp. DSM 30060
Pathway
ens02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ens00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HWQ15_04710 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ens03021
]
HWQ15_04710 (rpoD)
Transcription machinery [BR:
ens03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HWQ15_04710 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_SUN2
Motif
Other DBs
NCBI-ProteinID:
QLA01443
LinkDB
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Position
995879..997723
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AA seq
614 aa
AA seq
DB search
MEQNPQSQLKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAETSNNTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDMAPTA
THVGSELSQEEMDDDEDEDEEEDDDSSDDDNSIDPELAREKFAELRTQYEVTRDTIKAKG
RSHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERIIMKLCVEQCKMPK
KNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVKEDVQRGLQKLHQIEEETGLTIEQVK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT
PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTES
LRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSEVLRSFLDD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaaacttcttgtccaacgcggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgattcagatcag
atcgaagatatcatccaaatgatcaatgacatgggcattcaggtgatggaagaagcaccg
gatgccgatgatctgttgctggctgaaacctccaacaacactgatgaagatgcggaagaa
gctgctgcacaggtactgtccagcgtggaatctgaaatcgggcgtaccactgacccggtc
cgcatgtacatgcgtgaaatgggtaccgttgaactgttgacccgcgaaggcgaaattgac
atcgcaaaacgcatcgaagacgggatcaaccaggttcagtgctctgttgccgaatacccg
gaagcgattacctatctgctggagcagtacgatcgcgttgaagcggaagaagcgcgtctg
tccgatctgatcactggctttgtcgacccgaacgctgaagaagatatggcgccaaccgcc
actcacgtcggttctgagctgtctcaggaagagatggatgacgacgaagacgaagatgaa
gaagaagacgacgacagcagcgacgacgacaacagcatcgaccctgaactggcgcgcgag
aagtttgccgagctgcgtactcagtacgaagtgacgcgtgacaccatcaaagcgaaaggc
cgcagccatgctgccgctcaggaagagatcctgaagctgtcggaagtgttcaaacagttc
cgcctggtgccaaaacagttcgactacctggtgaacagcatgcgcgtgatgatggatcgc
gtacgtacccaggaacgtatcatcatgaagctgtgtgttgaacagtgcaaaatgccgaag
aagaatttcatcaccctcttcaccggcaatgaaaccagcgaaacctggttcaacgccgct
atcgcgatgaacaagccgtggtctgaaaagctgcacgacgtgaaagaagacgtacagcgc
ggcctgcaaaagctgcatcagattgaagaagagaccggcctgaccatcgagcaggtgaaa
gacatcaaccgtcgtatgtctatcggtgaagcgaaagcccgccgtgctaagaaagagatg
gttgaagcgaacttacgtctggttatctctatcgccaagaaatacaccaaccgtggcctg
cagttcctggatctgattcaggaaggcaacatcggtctgatgaaagcggtagataagttt
gaataccgtcgtggttacaagttctccacctatgctacctggtggatccgtcaggcgatc
acccgctctatcgcagaccaggcgcgcaccatccgtattccggtgcatatgattgagacc
atcaacaaactcaaccgtatctctcgccagatgttgcaggagatgggccgcgagccgacg
ccggaagagctggctgaacgcatgctgatgccggaagacaagatccgtaaagtgctgaaa
atcgctaaagagccaatctccatggaaacaccaattggtgatgatgaagattcgcatctg
ggtgatttcatcgaggatactaccctcgagctgccgctggactctgccaccaccgagagc
ctgcgtgccgctacgcacgacgtgctggctggcctgaccgcccgtgaagcgaaagtgctg
cgtatgcgtttcggtatcgacatgaacaccgaccacacgctggaagaagtgggtaaacag
tttgacgtgacccgcgaacgtatccgtcagatcgaagcgaaggcgctgcgtaagctgcgc
catccgagccgctctgaagtactgcgtagcttcctggacgactaa
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