Enterobacter sp. JJBC: RY075_08640
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Entry
RY075_08640 CDS
T11441
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
entj Enterobacter sp. JJBC
Pathway
entj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
entj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RY075_08640 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
entj03019
]
RY075_08640 (rne)
03009 Ribosome biogenesis [BR:
entj03009
]
RY075_08640 (rne)
Enzymes [BR:
entj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RY075_08640 (rne)
Messenger RNA biogenesis [BR:
entj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RY075_08640 (rne)
Ribosome biogenesis [BR:
entj03009
]
Prokaryotic type
rRNA processing factors
RY075_08640 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WWQ27777
LinkDB
All DBs
Position
complement(1810156..1813272)
Genome browser
AA seq
1038 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIEARQGGVRCIIVPNDEMQ
TPHYHVLRVRKGEETSTLSYLLPKLHEEEMALPSDEEPAERKLPEQPALATFIMPEAPPE
ATLEKPAAKPAVQKAAPAAAKAQPEQPGLLSRIFGALKKMFAGEEVQPEQPKEAPKEAKP
ERQQDRRKRQNNRRDRNDRNDRSDRNERRDNRSENNEGREQREDNRRNRREKQQQNVEDR
EIRQQAGDESEKSKQRDEQQPRRERNRRRNDEKRQAQQEVKNLNREAPVEQQDTEQEERT
QVMPRRKQRQLTQKVRVGAVQAEENDVIAVEAAESTTGTQVAKVDLPAVVENQVEQDESS
ENRDNAGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEMASGKVWIRY
PVARPEQAVEEQSVTEEVIAPIAAVEDVVTEAATVVEPQVVDTAAPQAVEVETTHPEVIA
APVDAAPQIIAEEDTVVAEEVAEDAQPVSAAEEPADVTVETVTEEVVQDVEIQVEPVVEE
VKAPEVKSEPIEVVAAVAPAHVATAPMTRAPAPEYVPEAPRHSDWVRPAFNFEGKGAAGG
HSATHMATAPATRPQPVE
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgcccttgtggat
gggcagcgcctgtacgatctggatatcgaaagtcctggacacgaacagaaaaaagcgaac
atttacaaaggcaaaatcacccgcattgaaccaagccttgaagctgcatttgtcgattac
ggtgctgagcgtcacggtttccttcctctcaaagaaatcgcccgcgaatattttcctgca
aactacaactcccatggccgtccgaacattaaagatgttctgcgtgaaggtcaggaagtt
atcgtccagatcgataaagaagagcgtggcaacaaaggtgccgcactgaccacctttatc
agtctggcaggaagctatctggtgttgatgccaaacaacccgcgtgcgggtggcatctct
cgccgtatcgaaggcgatgaccgtaccgagctgaaagaagcgctggcaagtcttgagctg
ccagacggcatgggccttatcgtgcgcaccgcaggcgtcggcaaatctgccgaagcattg
cagtgggacctgagcttccgtctgaagcactgggaagccatcaagaaagcggctgaaagc
cgtcctgctccgttcctgatccaccaggaaagcaacgtcattgtgcgtgccttccgtgat
tatctgcgtcaggacatcggtgaaattctgattgataacccgaaagtgcttgagctggct
cgccagcacatcgccgcgctgggtcgcccggatttcaccagcaaaattaaactgtacacc
ggtgaaatcccgctgttcagccactatcagattgaatcccagatcgagtctgccttccag
cgtgaagtgcgtctgccgtccggcggttctatcgttatcgataccaccgaagcgctgacc
gctatcgacatcaactccgcgcgtgcaacccgcggcggcgacatcgaagagaccgccttc
aacaccaacctagaagccgctgatgaaatcgcccgccagctccgcctgcgcgacctgggt
ggtctgattgttatcgacttcatcgacatgaccccggttcgccaccagcgtgcggttgaa
aaccgtctgcgtgaagcggtgcgccaggatcgcgcgcgtatccagattagccatatctcg
cgcttcggcctgctggaaatgtcccgtcagcgtctgagcccgtcactcggcgagtccagc
catcacgtctgcccgcgctgttccgggacaggtaccgtgcgtgacaatgaatcgctctcc
ctctctattctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaggttcac
gccattgttccggtgccgattgcctcctacctgctgaacgaaaaacgtgcagcggtgagc
gcaatcgaagcgcgtcagggcggcgttcgctgcatcatcgtgccaaacgacgagatgcaa
accccgcactatcacgtgctgcgcgtgcgtaaaggtgaagagacaagcaccctcagctac
ctgctgccgaagcttcatgaagaagaaatggcgctgccatcggatgaagagcctgccgag
cgtaaactgcctgagcagcctgcattagcaaccttcatcatgccggaagccccgccggaa
gcgacgctggaaaaaccagcggcaaaacctgccgtgcaaaaggcggcccctgccgcggca
aaagcgcagcctgagcagccgggtctcctgagccgcatcttcggcgcgctgaaaaaaatg
tttgctggcgaagaagttcagcctgagcagccgaaagaagcgccaaaagaagcgaaacca
gagcgtcagcaggaccgtcgtaagcgtcagaacaatcgtcgcgatcgtaatgaccgcaac
gaccgtagcgatcgtaacgagcgccgtgataatcgttccgagaacaacgaaggtcgtgaa
caacgcgaggacaaccgtcgcaaccgtcgcgagaagcagcagcagaacgttgaagatcgt
gagattcgccagcaggcgggcgatgagtccgagaagagcaaacagcgtgacgagcagcaa
cctcgccgcgagcgtaaccgtcgtcgtaacgacgagaaacgccaggcccagcaggaagtc
aaaaacctgaaccgcgaagcgcctgttgaacagcaggacacggagcaggaagagcgtact
caggttatgccgcgtcgtaagcagcgtcagctgacccagaaagtgcgtgtgggtgctgtt
caggcggaagaaaacgacgttatcgcggttgaagcagcagaaagcacaacgggtacacag
gttgcgaaagttgacctgccagccgtagtagaaaatcaggttgagcaggacgaaagcagc
gaaaaccgtgacaacgcaggtatgccgcgtcgctcccgtcgttctccgcgtcatctgcgc
gtgagcggtcagcgtcgtcgtcgttaccgtgacgagcgttacccaactcagtcgccaatg
ccattgaccgtggcgtgcgcgtcacctgagatggcatccggtaaagtctggatccgttat
ccggttgctcgcccggaacaggctgttgaagaacagtctgtgaccgaagaggtgattgca
ccgatagcagcggtggaagacgtcgtgactgaagcggcaaccgtggttgaaccgcaggtt
gttgacacggcggcaccgcaggctgtggaagtggaaacgacccatcctgaagtcattgct
gcgccggttgatgccgctccgcagatcattgccgaagaagataccgtggtagctgaagaa
gtcgcggaagacgctcagccagtctccgcagcagaagagcccgcagacgttaccgtcgaa
acggtgactgaagaggttgttcaggacgtcgagattcaggttgaacctgttgtcgaagag
gtcaaagcgcctgaagtgaaatcagagccgattgaggtcgttgcagctgtagcgcctgct
cacgttgctaccgcgccgatgactcgcgccccggcacctgagtatgtgcctgaagcgcca
cgccatagcgactgggttcgtccggcattcaacttcgaaggcaaaggtgctgccggtggt
cacagtgcaacgcacatggctactgcgccagctactcgtcctcagcctgttgaataa
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