Entomomonas sp. E2T0: MTZ49_09615
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Entry
MTZ49_09615 CDS
T09961
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ento
Entomomonas sp. E2T0
Pathway
ento03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ento00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MTZ49_09615 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ento03400
]
MTZ49_09615 (mfd)
Enzymes [BR:
ento01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MTZ49_09615 (mfd)
DNA repair and recombination proteins [BR:
ento03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MTZ49_09615 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
AroM
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UYZ82869
LinkDB
All DBs
Position
2003302..2006757
Genome browser
AA seq
1151 aa
AA seq
DB search
MSVLSLPKLSKNSSKVEWGGLVGASLSLAVAETALTNQHFTLLLTPDSLTADRLTRELKF
FAPTLTILNFPDWETLPYDVFSPHQDIISQRIATLYRLPSVKQGILVVPITTVLQRIAPV
SFILGSGLVVKIGDKINVEEMRSRLENAGYRCVDTVYEHGEFAVRGALFDLFPMGSNVPY
RIDLFDDEIETLRTFDPETQRSIDKVDSIDLLPAHEFPLDKQAIKEFRQRFKDQFDVDYR
RCPIYQDLATGITPSGIEYYAPLFFEQTATLFDYLPDDTQVFSLPKVEEASEHFWRDVKN
RYEDRRYDIERPILEPKQLFLAVDECFGQLKKWPRIVVQATTVEQGNNKQNFAVEPLPDL
AVESRATEPLGKLRQFIEQFDGRLLFTAETAGRREVVLELLARLKIRPTEVPSWQAFVDS
SEPIAITIANLDEGLVLAKPAIALIAEAPLFGQKIMQRRRRQKRGEVTNENIVKNLTELR
EGAPVVHIDHGVGRYQGLVTLEVEEQPQEFLMLEYAEGAKLYVPVANLHLIARYTGADDE
LAPLHRLGSEQWQKARRKAAEQVRDVAAELLDIYARRAARKGFAFTKPETDYAAFVAGFP
FEETVDQQTAIDAVVEDMTAGKPMDRLICGDVGFGKTEVAIRAAFIAVQSGKQVAVLVPT
TLLAQQHYNSFRDRFADWPVKVEVLSRFKSTKEINKAVEELAEGRIDIVIGTHKLLQEDV
KFKNLGLVVIDEEHRFGVRQKERLKALRSEVDVLTMTATPIPRTLNMAMSGMRDLSIIAT
PPARRLSVRTFVMEQQNAVIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMADFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPSKKSMTDDAQKRLEAIANAQDLGAGFVLATHDMEIRGAGEL
LGEGQSGQIQAVGFSLYMDMLERAVKAIQKGEEPSLEQPLGTGIDINLRLPALIPEDYLP
DVHNRLILYKRIASAASEDELKELQVEMIDRFGLLPEPLKNLIRQTRLKIEAEQLGITKI
DAGPQGGKVEFSANTSVDPLTLIKLIQSQPNRYKFEGGTTFKFQIPMEKAEERFTTIETL
LEKLKMQDNEK
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtactatctcttccaaagctatcaaagaactcaagtaaagttgagtggggtgga
ttggtgggtgcttcactcagtttagcagttgcagaaactgctttaaccaaccaacatttc
accttattattaactcctgatagtttaacagcagatcgactgacccgtgaattaaagttt
tttgctccaacacttacaattcttaactttcctgattgggaaaccctaccttatgatgtg
ttctcaccacatcaagatattatttcacaacgtattgcaacactttatcggctacctagt
gttaagcaaggtattttagttgtacccatcaccaccgtattacaacgcattgcccctgtt
tcattcatattaggcagtggcttagtggtgaaaataggcgataaaataaatgttgaggaa
atgcgcagtcgcctagaaaatgcaggttatcgctgtgttgatacagtgtatgaacatggt
gagtttgctgtacgtggtgctttatttgatttatttccgatgggcagtaatgtgccttat
cgtattgatttatttgatgatgaaatagaaacattacgtacctttgaccctgaaacacaa
cgctctattgataaagtagatagtattgacctgctaccagcccatgagtttccgttagat
aagcaagcgatcaaagagtttagacaacgttttaaagatcagtttgatgtggactatcgt
cgctgtcctatttaccaagatttagcaacaggtattacgccttcaggcattgaatactat
gcccccttgttttttgaacaaacggctaccttatttgattatttacctgatgatactcaa
gtgttctccttacctaaggtagaggaggccagtgaacatttttggcgtgatgtcaaaaac
cgctatgaagatcgtcgctacgatattgaaagacctattctagagcctaagcaattattt
ttagcggttgacgaatgttttgggcaattaaagaaatggcctagaattgtggtacaagca
actacagtagaacaaggtaataataaacaaaactttgctgttgaaccactaccagattta
gccgttgagtcacgtgctactgaaccacttggtaagttacgccagtttattgaacaattt
gatggccgactattatttacagcagaaacagcaggtcgtcgtgaagttgtattagaacta
ttggcacggttaaaaatccgcccaacagaagtaccaagttggcaagcttttgttgacagt
tctgagccaatagctattacgattgctaatcttgatgaggggttagtgttagcaaaacca
gcaattgctttaattgctgaagcgccattatttgggcaaaaaattatgcagcgtcgccgc
cgtcaaaaacgcggtgaagtaaccaatgaaaatattgttaagaacctcactgaattaagg
gaaggtgcacctgttgttcatattgaccatggggtaggtcgttatcaaggattagttacc
ttagaagtagaagagcaaccacaagaatttttaatgcttgaatatgcagagggtgcaaaa
ctttacgtacctgttgcaaacttacatttgattgctcgctatacaggggcagatgatgaa
ttagcaccactacatcgcttaggttcagagcaatggcaaaaagcacgtcgtaaagccgct
gaacaagtacgagatgtagcggctgaactattagatatttatgcccgtcgtgctgctcgt
aaaggttttgcttttaccaaacctgaaacagattatgctgcttttgtggctggcttcccc
tttgaagaaacagtggatcaacaaacagctattgatgctgttgtagaagatatgacagca
ggtaaaccaatggatcgcttaatttgtggcgatgttggttttggtaaaacagaagtggct
attcgtgctgcttttattgctgtgcaaagtggtaagcaagtggcggtattagtgcctact
accttgctagcacaacaacactataatagttttcgtgaccgctttgctgactggcctgtt
aaagttgaagtattaagtcgttttaaatctaccaaagaaatcaataaagcggtagaggaa
ttggctgaaggcagaatagatattgtgataggaacgcataaactattacaagaagatgtt
aaatttaaaaatcttggtttagtggtgattgatgaggaacatcgctttggggtacgtcaa
aaagaacgtctcaaagcattacgtagtgaagttgatgtacttaccatgaccgcaacacct
atcccccgtaccttaaatatggctatgtcgggtatgcgtgatttatccattattgcaaca
ccacctgcgcgtcgtttatctgtgcgtacttttgtgatggaacagcaaaatgctgtaatt
aaagaagccttactacgtgagttattacgtggtggacaggtttattatttacataatgat
gttaaaaccattgaaaaatgtgcagctgatttagcggagttagtacctgaagctagaata
ggaatagggcatggccaaatgcgtgagcgcgaattagaacaagtaatggcagacttctac
cataaacgttttaatgtgctagttgcttctactattattgaaacaggtatcgatgtacct
agtgctaatactattgttattgagcgagcagataaatttggtttagcacaacttcaccaa
ctgcgtggtcgagtagggcgtagccatcaccaagcttatgcctacttactaacaccttct
aaaaagagcatgacggatgatgcacaaaagcgcctagaagctattgctaatgctcaagac
ttaggtgcaggttttgtgttggccactcacgatatggaaatacgtggtgcgggtgagctg
ttaggtgagggacaaagtggtcaaatccaagcggtgggcttctcactctatatggatatg
ttagagcgtgctgttaaagcgattcaaaaaggagaagagccaagcctagaacaaccactg
ggtacaggtattgatattaacctacggctacctgcgttaattccagaggattacttacct
gatgtgcataatcgtttaattctttataagcgtattgcatcagcagccagtgaagatgaa
ctaaaagagttgcaagtggaaatgatagaccgttttggtttactacctgaaccactaaaa
aatcttattagacaaacacgcctaaaaatagaggcagaacaactaggcattactaaaata
gatgcaggtccccaaggtggtaaagtagagttttcagctaataccagtgttgatccatta
acactgattaaactgatccaaagccaacctaatcgctataaatttgaaggtggtactacc
tttaaattccaaatacctatggagaaagcagaagaacgttttactactattgaaacgttg
ttagaaaagctaaaaatgcaagataatgaaaagtaa
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