Enterobacter sp. YSU: H2Z33_22300
Help
Entry
H2Z33_22300 CDS
T11024
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
enty Enterobacter sp. YSU
Pathway
enty03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
enty00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H2Z33_22300 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
enty03019
]
H2Z33_22300 (rne)
03009 Ribosome biogenesis [BR:
enty03009
]
H2Z33_22300 (rne)
Enzymes [BR:
enty01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
H2Z33_22300 (rne)
Messenger RNA biogenesis [BR:
enty03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H2Z33_22300 (rne)
Ribosome biogenesis [BR:
enty03009
]
Prokaryotic type
rRNA processing factors
H2Z33_22300 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
QPX97572
LinkDB
All DBs
Position
4638574..4641690
Genome browser
AA seq
1038 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIEARQGGVRCIIVPNDEMQ
TPHYHVLRVRKGEETSTLSYLLPKLHEEEMALPSDEEPAERKLPEQPALATFIMPEAPPE
ATLEKPAAKPAVQKAAPAAPKAQPEQPGLLSRIFGALKKMFAGEEVQPEQPKEAPKEAKP
ERQQDRRKRQNNRRDRNDRNDRSDRNERRDNRSENNEGREQREDNRRNRREKQQQNVEDR
EIRQQAGDESEKSKQRDEQQPRRERNRRRNDEKRQAQQEVKNLNREAPVEQQDTEQEERT
QVMPRRKQRQLTQKVRVGAVQTEENDIIAVETAESTTGTQVAKVDLPAVVENQVEQDESS
ENRDNAGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEMASGKVWIRY
PVARPEQAVEEQAVTEEVIAPVAAVEDVVTEAATVVEPQVVDTAAPQAVEVETTHPEVIA
APVDAAPQIIAEEDTVVAEEVAEEAEPVSAAEEPADVAVETVTEEVVQDVEIQVEPVVEE
VKEAEVKSEPVEVVAAPAPAHVATAPMTRAPAPEYVPEAPRHSDWVRPAFNFEGKGAAGG
HSATHMATAPATRPQPVE
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgcccttgtggat
gggcagcgcctgtacgatctggatatcgaaagtcctggacacgaacagaaaaaagcgaac
atttacaaaggcaaaatcacccgcattgaaccaagccttgaagctgcatttgtcgattac
ggtgctgagcgtcacggtttccttcctctcaaagaaatcgcccgcgaatattttcctgca
aactacaactcccatggccgtccgaacattaaagatgttctgcgtgaaggtcaggaagtt
atcgtccagatcgataaagaagagcgtggcaacaaaggtgccgcactgaccacctttatc
agcctggcaggaagctatctggtattgatgccaaacaacccgcgtgcgggtggcatctct
cgccgtatcgaaggcgatgaccgtaccgagctgaaagaagcgctggcaagtctcgagctg
ccagacggcatgggccttatcgtgcgcaccgcaggcgtcggcaaatctgccgaagcgttg
cagtgggacctgagcttccgtctgaagcactgggaagccatcaagaaagcggctgagagc
cgtcctgctccgttcctgatccaccaggaaagcaacgttattgtgcgtgccttccgtgat
tatctacgtcaggacatcggtgaaattctgattgataacccgaaagtgcttgagctggct
cgccagcacatcgccgcgctgggtcgcccggatttcaccagcaaaattaaactgtacacc
ggtgaaatcccgctgttcagccactatcagattgaatcccagatcgagtctgccttccag
cgtgaagtgcgtctgccgtccggcggttctatcgtaattgataccaccgaagcgctgacc
gctatcgacatcaactccgcgcgtgcaacccgtggcggcgacatcgaagagaccgccttc
aacaccaaccttgaagccgctgatgaaatcgcccgccagctccgcctgcgcgacctgggt
ggtctgattgttatcgacttcatcgacatgaccccggttcgccaccagcgtgcggttgaa
aaccgtctgcgtgaagcggtgcgccaggatcgcgcacgtatccagattagccatatctcg
cgcttcggcctgctggaaatgtcccgtcagcgtctgagcccgtcactcggcgagtccagc
catcacgtctgcccgcgctgttccggtacgggtaccgtgcgtgacaatgaatcgctctcc
ctctctattctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaggttcac
gccatcgttccggtgccgattgcctcctacctgctgaacgaaaaacgtgcagcggtaagc
gcaattgaagcgcgtcagggcggtgttcgctgcatcatcgtgccaaacgacgagatgcaa
accccgcactatcacgtgctgcgcgtgcgtaaaggcgaagagacaagcaccctcagctac
ctgctaccgaagctgcatgaagaagaaatggcgctgccatcggatgaagagcctgccgag
cgtaaactgcctgagcagcctgcattagcaaccttcatcatgccggaagccccgccggaa
gcgacgctggaaaaaccagcggcaaaacctgccgtgcaaaaggcggcccctgccgcgcca
aaagcgcagcctgagcagccgggtctcctgagccgcatcttcggcgcgttgaaaaaaatg
tttgctggcgaagaagttcagcctgagcagccgaaagaagcgccaaaagaagcgaaacca
gagcgtcagcaggaccgtcgtaagcgtcagaacaatcgtcgcgatcgtaatgaccgcaac
gaccgtagcgatcgtaacgagcgccgtgataatcgttccgagaacaacgaaggtcgtgaa
caacgcgaggacaaccgtcgcaaccgtcgcgagaagcaacagcagaacgttgaagatcgt
gagattcgccagcaggcgggcgatgagtccgagaagagcaaacagcgtgacgagcagcaa
cctcgccgcgagcgtaaccgtcgtcgtaacgacgagaaacgccaggcccagcaggaagtc
aaaaacctgaaccgcgaagcgcctgttgaacagcaggacacggagcaggaagagcgtact
caggttatgccgcgtcgtaagcagcgtcagctgacccagaaagtacgtgtgggtgctgtt
cagacggaagaaaacgacattatcgcggttgaaacagcagaaagcacaacgggtacccag
gttgcaaaagttgacctaccagccgtagtggaaaatcaggttgagcaggacgaaagcagc
gaaaaccgtgacaacgcaggtatgccgcgtcgctcccgtcgttctccgcgtcacctgcgc
gtgagcggccagcgtcgtcgtcgctaccgtgacgagcgttacccgactcagtcgccaatg
ccgctgaccgtggcgtgcgcgtcacctgagatggcatccggtaaagtctggatccgttat
ccggttgctcgcccggagcaggctgttgaagaacaggctgtgaccgaagaggtgattgca
ccggtagcagcggtggaagacgtcgtgactgaagcggcaaccgtggttgaaccgcaggtt
gttgacacggcggcaccgcaggctgtggaagtggaaacgacccatcctgaagtgattgct
gcgccggttgatgccgccccgcagatcattgccgaagaagataccgtggtggctgaagaa
gtcgcggaggaagctgaaccagtctccgcagcagaagagcccgcagacgttgccgtcgaa
acggtgacggaagaggttgttcaggacgtcgagattcaggttgagcctgttgtcgaagag
gtcaaagaggctgaagtgaaatccgagccggttgaggtcgttgccgctccagcgcctgct
cacgttgctaccgcgccgatgactcgcgccccggcacctgagtatgtacctgaagcgcca
cgccatagcgactgggttcgtccggcattcaacttcgaaggcaaaggtgctgccggtggt
cacagtgcaacgcacatggctactgcgccagcgacccgtcctcagcctgttgaataa
DBGET
integrated database retrieval system
