Sinorhizobium numidicum: PYH37_002307
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Entry
PYH37_002307 CDS
T09000
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
enu
Sinorhizobium numidicum
Pathway
enu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
enu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PYH37_002307 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
enu03400
]
PYH37_002307 (ligD)
Enzymes [BR:
enu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PYH37_002307 (ligD)
DNA repair and recombination proteins [BR:
enu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PYH37_002307 (ligD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WEX77506
LinkDB
All DBs
Position
1:99798..102368
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AA seq
856 aa
AA seq
DB search
MATLKTYRQKRDFGTTPEPKGRRARKSGNSFVVQKHDATRLHYDFRLELDGVLKSWAVTK
GPSLVPGEKRLAVHVEDHPLEYGDFEGTIPKGEYGGGTVIVWDRGTWTPVHDAAKGYAKG
HMEFELKGEKLGGRWHLVRMHHRPGEKRENWLLIKGEDDAARSEGAPDILEERPESVKTG
RDIKEVAGEEPGWSSKTGKISRKGRSQAKSKRPAATDEREAPVLPDLSRIKGAKKAPLPA
FVEPTLATLMKAPPTGPRWIHEIKFDGYRLLARIEAGRVKLLTRSGLDWTEKFGKAIVAA
LQAMPIGSAFIDGELVVERASGASDFSALQADLSEGRSDRFVFYVFDLLYLDGFDLRSLP
LIERKQLLSKLAGSGLGLIRYSDHFDEHGALVLRHACRLGLEGVVSKLRDASHRPGRGKA
WIKSKCSARQEFVVAGYVPSTVSRRAIGSLILGVYDGDRLEHVGRVGTGFTGAVAEELFR
RLDGMRIRESPFSERLTADEARQARFVRPELVAEVEFGAWTADGNLRHASFRGLREDKAP
SDVMREGSKAAAKLPKPPRRRVTLTHPDRLYWPDEGVTKEGLADYYTEVWRYIAPYVVGR
PLALVRCPSGITGEKFFQKHAWKGLNPNIVLVKDPKEKSEEPLIAIDDLDGLIGLVQSAV
LEIHPWGSTAADWERPDTIIMDLDPGEGVPWNAVIAAASETRERLAGEGLASFVKTSGGK
GLHVVAPLKPKAEWPEVKAFTKAIADAMALDSPDRFVSTITKSKRRGKILVDYLRNQRGM
TAVAPYSTRARPGAAVSMPLAWDELNEGIGPPYFTVSNTPTRLVALAADPWEEFRAAAAP
LEAKKKGRSGRAFAEH
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgctcaagacctatcgccaaaaacgcgacttcgggacaacgccggagccgaag
ggcagacgggcgcgcaaatccggaaacagcttcgttgtccagaagcacgacgccacccgg
ctgcattacgacttccggctggagttggacggcgtcttgaagagctgggcggtcacgaaa
gggccgagcctcgttcccggggaaaagcgcctggcggtccatgtcgaggatcatccgctc
gaatacggggatttcgagggcaccatcccgaaaggcgaatatggcggcggcacagtcatc
gtctgggaccgcggaacctggacgccggttcacgacgcggccaaaggctatgccaagggc
catatggaattcgaattgaagggagagaagcttggcggccgctggcatctcgtcaggatg
caccacaggcccggtgagaagcgcgagaactggctgctgatcaagggcgaggacgatgca
gcgcgatcggaaggcgcgccggatatattggaggagcggccggaatcggtgaagaccggc
cgggatataaaggaggtggccggcgaagagcccggatggtcgtcgaagaccggcaagatc
agcaggaagggcaggtcgcaggcgaagagcaagcgcccggccgcgacggatgagcgagag
gcgccggttcttccggatctgtcgcggatcaaaggggcgaagaaagcgccgcttcccgcg
ttcgtagagccgacattggcgacgttgatgaaggcgcctcccaccggtccccgctggatt
catgagatcaagttcgatggctatcggctgctcgcccggatcgaggcgggccgcgtgaag
cttctgacccgcagcggtctggactggaccgaaaaattcggcaaggccatcgttgctgcc
ttgcaggcaatgccgatcggcagcgcgttcatcgacggtgagctcgttgtcgagcgcgct
tcgggcgcatccgatttttcggcgcttcaggctgacctcagcgagggccggtccgaccgc
ttcgtcttctacgtcttcgatctgctctatctcgacggtttcgacctgagatccttgccg
ctcatcgagcgcaagcaattgctcagcaagctcgctggttcggggttggggctcattcgt
tacagcgaccattttgacgagcacggcgcgctggtgctgcggcatgcctgccgccttggc
ctcgaaggcgtggtctccaagctccgggacgcaagccatcgtcccggtcgtggcaaggcg
tggatcaaatcgaagtgctcggcccggcaggagttcgtcgtcgccggctacgtaccctcc
accgtttcgcgccgggcgatcggttcgctcattctcggcgtctatgacggtgataggctc
gaacatgtcggccgcgtcggcactgggtttacgggtgcggtagccgaagaactcttccgc
cgcctcgatggcatgcggattcgggaaagcccgttctctgagcgcttgacggcggacgag
gcacggcaggcgcgtttcgttcggcccgagcttgtcgccgaggtggaattcggcgcatgg
accgccgatggcaacctgcggcacgcctccttccggggtttgagggaggacaaggccccc
agtgatgtaatgcgcgaaggctcgaaagctgcggccaaactgccgaagccgcctcgccgc
agggtgacgctcacgcatcccgatcgcctttactggccggatgaaggtgtgacgaaggag
gggcttgcggattactataccgaagtctggcgctacatcgctccctatgtcgtcggccgg
ccgctggcgctcgtgcgctgtccgagcggcataacgggcgagaagtttttccagaagcat
gcctggaagggcctcaatcccaatattgtgctggtcaaggacccgaaggaaaaatccgag
gagccgctgattgcgatcgacgatctcgatggtctgatcggcctggtgcagtccgccgtt
ctggagattcacccatggggatcgaccgctgccgactgggagcgcccggacacgatcatc
atggatctggatcccggcgaaggcgtgccgtggaatgccgtcatcgcggccgcgagcgaa
acgagggagcgccttgccggcgaaggactggcatccttcgttaagacatccggcggcaag
ggtttgcatgtggtggcgccgctgaagccaaaggccgaatggccggaggtgaaggcgttc
acgaaagcaatcgccgatgccatggcgttggacagtccggatcggttcgtttcgaccatc
accaaatcgaagcggcgcggcaagatcctggtcgattatctgcgcaatcaacgcggcatg
accgcggttgccccttattccacccgggcgcggccgggcgctgcggtatccatgccgctt
gcctgggatgaattgaacgagggcataggcccgccctattttaccgtttccaacacacct
acgcggctggtagcactggcagccgatccgtgggaggagtttcgcgcggcggccgcgccg
ctagaagcgaagaagaaaggcagaagcggcagagcctttgcggaacattga
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