Sinorhizobium numidicum: PYH37_003595
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Entry
PYH37_003595 CDS
T09000
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
enu
Sinorhizobium numidicum
Pathway
enu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
enu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PYH37_003595 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
enu03021
]
PYH37_003595 (rpoC)
03400 DNA repair and recombination proteins [BR:
enu03400
]
PYH37_003595 (rpoC)
Enzymes [BR:
enu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PYH37_003595 (rpoC)
Transcription machinery [BR:
enu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PYH37_003595 (rpoC)
DNA repair and recombination proteins [BR:
enu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PYH37_003595 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
WEX78679
LinkDB
All DBs
Position
1:1437500..1441705
Genome browser
AA seq
1401 aa
AA seq
DB search
MNQEVMNLFNPQVPAQTFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIATLLDMTLKDIERVLYFENYIVTEPGLTSLKENQLLSEEEYMLAVDEFGEDQFTA
MIGAEAIYEMLASMNLERIAGDLRAEMAETSSDLKQKKLMKRLKIVENFMDSGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIMNQNEPGEGMAFSDMGELHHALE
TKAVTLHAKIRGRYKTVDAEGNPVSKIYETTPGRMIIGELLPKNPNVPFDICNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFSHACRAGISFGKDDMVIPDTKVKIVGDTEAL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDDNGRQKPMNSIYM
MSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIVTHTDCGTDKGLTMTAIVDAGQVVASIGQRILGRTA
LDNIDNPVTGERIVDAGKMILEPDVVEIEKAGIQSVRIRSALTCEIQTGVCGVCYGRDLA
RGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTVQIKNRNM
LRNSDGILVAMGRNMAIQILDERGVERSSQRVAYGSKIFVDDGDKVKRGQRFAEWDPYTR
PMMTEVEGTVHFEDVVDGISVLEATDESTGITKRQVIDWRSTPRGTDLKPAIVIKDKNGN
IAKLARGGEARFMLSVDAILSVEPGQKVSQGDVLARSPLESAKTKDITGGLPRVAELFEA
RRPKDHAIIAEIDGTVRFGRDYKNKRRVLIEPAEDGVEPVEYLIPKGKPFHLQDGDYIEK
GDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVEI
TDAGDSTYIVGDNVDRIELEDVNDALIAEGKKPAFGDPVLLGITKASLQTPSFISAASFQ
ETTKVLTEAAVAGKTDNLQGLKENVIVGRLIPAGTGGTMTQIRRIATARDEMILEERRKG
TGAEAATPMLSDMANENAAAE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatccgcaggtgcctgcacagaccttcgattcc
atccggatttcgatcgcctcgccggagaagattctttcctggtcttacggtgagatcaag
aaaccggagacgatcaactaccgcacgttcaagccggagcgcgatggtcttttctgcgca
cgcatcttcgggccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaaa
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtgacgttgtcgcgcgttcgccgt
gagcgcatgggccacatcgagctggctgcgcccgttgcccatatctggttcctgaagtcg
ctgccgagccgcattgcaacgctgctcgacatgacgctgaaggatatcgagcgcgttctt
tatttcgaaaactacatcgtcaccgaacccggcctgacttcgctcaaggaaaaccagctc
ctgagcgaagaggagtacatgctcgcggttgacgagttcggtgaagaccagttcaccgcg
atgatcggcgctgaagcgatctatgagatgctcgcttcgatgaatctcgagaggattgcc
ggcgatctgcgcgcggagatggcagagacgagctcggatctgaagcagaagaagctgatg
aagcggctgaagatcgtcgagaacttcatggattccggcaaccgtccggaatggatgatc
atgaaggtcgtcccggtcatcccgccggaccttcgtccgctggtgccgctcgacggcggc
cgtttcgcgacgtcggacctgaacgatctctaccgccgtgtgatcaaccgtaacaaccgt
ttgaagcggcttatcgaactgcgtgcgccgggcatcatcatccgcaacgaaaagcgcatg
ctgcaggaatccgtggacgcgctgttcgacaacggccgtcgcggccgcgtcatcacgggt
gcaaacaagcgtccgttgaagtcgctctccgacatgctcaagggcaagcagggccgcttc
cgtcagaacctgctcggcaagcgcgtcgactattccggccgttcggtcatcgtgaccggt
ccggaactcaagctgcatcagtgcggcttgccgaagaagatggcgctcgagctcttcaag
ccgttcatctatgcccgcctagacgccaagggttactcctcgaccgtcaagcaggcaaag
aagctcgtggaaaaggaaaagccggaagtctgggatatcctcgatgaggttatccgtgag
catccggttctcctgaaccgtgcgccgacgctgcaccgcctgggcatccaggccttcgaa
ccgatcctggtcgagggcaaggcgatccagttgcatccgctcgtctgcacggccttcaac
gccgacttcgacggtgaccagatggccgttcacgtgccgctgtcgctcgaagcccagctt
gaagcgcgcgtcctgatgatgtcgacgaacaacatcctgcaccccgccaacggtgcaccg
atcatcgttccgtcgcaggacatggtcctcggtctctactacctctcgatcatgaaccag
aacgagccgggcgaaggcatggcgttttccgacatgggcgaattgcaccatgcgctggaa
accaaagccgtcactctgcacgcaaagatccgtggccgttacaagaccgtcgatgccgag
ggcaacccggtttcgaagatctacgaaacgacgcccggccgcatgatcatcggcgagctc
ctgccgaagaatccgaacgttccgttcgatatctgcaaccaggagatgaccaagaagaac
atctccaagatgatcgacacggtttatcgccattgcggtcagaaagacacggtgatcttc
tgcgaccggatcatgcagctcggcttctcgcatgcctgccgcgccggcatttcgttcggc
aaggacgacatggtgatcccggacaccaaggtgaagatcgtcggcgataccgaagcgctc
gtgaaggaatacgagcagcagtacaatgacggcctcatcacccaaggcgagaagtacaac
aaggttgtcgacgcctggggcaaggcgaccgaaaaggtcgccgaagagatgatggcgcgc
atcaaggcggtcgagttcgacgacaacggtcgccagaagccgatgaactcgatctacatg
atgtcgcactcgggcgcccgcggttcgccgaaccagatgcgccagctgggcggtatgcgc
ggccttatggccaagccgtcgggcgagatcatcgaaacgccgatcatctcgaacttcaag
gaaggtctgaccgtgaacgagtacttcaactcgacgcacggcgcccgtaagggtctggcg
gacaccgccttgaagactgcgaactctggttatctgacccgtcgtctcgtcgatgtggcg
caggactgcatcgtcacgcatacggattgcggcaccgacaagggcctcacgatgactgcg
atcgtcgatgctggtcaggtcgtggcctcgatcggccagcgtatccttggccgtaccgcg
ctcgacaacatcgacaatccggtcaccggcgagcgcatcgtcgatgccggcaagatgatc
ttggaacccgatgtcgtcgagatcgagaaggccggcatccagtccgtccgcattcgctcg
gcgctgacttgcgaaatccagaccggagtctgcggcgtctgctacggccgcgacctcgct
cgtggtacgccggtcaacatgggcgaggctgtcggtgtcatcgccgcacagtcgatcggt
gagccgggcacccagctgaccatgcgtaccttccacctcggcggtacagcgaccgtggtc
gaccagtcgttcctggaagcgtcctatgaaggtacggtccagatcaagaaccgcaacatg
ctgcgcaactccgatggcatactcgttgccatgggccgcaacatggcgatccagatcctg
gacgaacgcggcgtcgagcggtcctcgcagcgcgttgcctatggttcgaagatcttcgtg
gacgatggcgacaaggtgaagcgcggccagcgttttgccgagtgggacccctacacccgt
ccgatgatgacggaagtggaaggtaccgttcacttcgaagacgttgtcgacggcatctcg
gttctcgaagcgaccgacgaatcgaccggcatcaccaagcgtcaggttatcgactggcgc
tcgacgccgcgcggtacggacctgaagccggcgatcgtcatcaaggacaagaacggcaac
atcgcgaagctcgctcgtggcggcgaggctcgtttcatgctctcggtcgacgcgatcctc
tcggtcgagccggggcagaaggtgagccagggtgacgttctcgcccgttcgccgctcgaa
agcgccaagaccaaggacatcaccggtggtctgccgcgcgttgccgagttgttcgaagct
cgtcgtccgaaggaccacgccatcatcgctgagatcgatggtacggttcgtttcggccgc
gattacaagaacaagcgtcgcgtgctgattgagccggcggaagacggtgtcgaaccggtc
gagtacctgatcccgaagggcaagcccttccatcttcaggacggcgactacatcgagaag
ggcgactacatcctcgacggcaacccggctccgcacgacatcctggcgatcaagggcgtg
gaagcgcttgcttcctatctcgtcaacgaaatccaggaagtttatcgtctgcagggcgtt
gtcatcaacgacaagcacatcgaagtgatcgtgcgtcagatgctgcagaaggttgaaatc
accgacgccggtgactcgacctacatcgtcggcgacaacgtcgaccgcatcgagctcgag
gatgtcaacgatgcgctgatcgcggaaggcaagaagcccgcctttggtgacccggttctg
ctcggcatcaccaaggcgtcgctgcagacgccgtccttcatctcggccgcctcgttccag
gaaacgaccaaggtccttaccgaggccgcggttgcaggcaagacggacaatcttcagggt
ctgaaggaaaacgtcatcgttggccgtctcatcccggccggcaccggtggtaccatgacg
cagatccgccggatcgcaacggcccgcgacgagatgattctcgaagagcgccgcaagggc
acgggcgcggaggctgctacgccgatgctctccgacatggcgaacgagaacgccgccgcg
gaataa
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integrated database retrieval system
