Sinorhizobium numidicum: PYH37_004784
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Entry
PYH37_004784 CDS
T09000
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
enu
Sinorhizobium numidicum
Pathway
enu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
enu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PYH37_004784 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
enu03021
]
PYH37_004784 (rpoD)
Transcription machinery [BR:
enu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PYH37_004784 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Relaxase_C
DUF5856
Phage_DsbA
DUF4350_C
DUF3106
DUF4351
Motif
Other DBs
NCBI-ProteinID:
WEX76474
LinkDB
All DBs
Position
1:complement(2650641..2652695)
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AA seq
684 aa
AA seq
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MATKVKENEEADVEREGAPDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTS
EQIEDTMSMLSDMGINVIEDEEAEEAAGGDDEDSSDEGESEGGELATSTGTALAAGKKKE
PTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALIIWRD
ELNEGQTLLREIIDLETTYSGPEAKAAPQFQSAEKIEADRKAAEEKEKVRKTRAAANDDD
ITNVGGDSQPVEEEEEDDDESNLSLAAMEAELRPQVMETLDIIAETYKKLRKLQDQQVEA
RLAATGTLSPAQERRYKELKDELIKAVKSLSLNQNRIDALVEQLYDISKRLMQNEGRLLR
LAESYGVKRDSFLEQYSGAELDPNWMKSISNLAGKGWKEFARAENQTIRDIRQEIQNLAT
ETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN
IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQ
MLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNAL
LPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQ
IEAKALRKLKHPSRSRKLRSFLDS
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaagtcaaagaaaacgaagaagcagacgttgaacgcgaaggcgctccggac
ggcccgcttctcgatctttccgacgacgctgtcaagaagatgatcaaggccgccaagaag
cgcggctatgtgacgatggacgagctcaactccgttcttccctccgaggaggttacctcc
gagcagatcgaagacacgatgtccatgctttcggacatgggcatcaacgtcatcgaggac
gaggaagccgaggaagcggccggcggcgacgacgaggacagcagcgacgagggcgagagc
gagggcggcgaactggccacctccaccggcaccgcgcttgcggccggaaagaagaaagag
ccgaccgaccgtaccgacgaccccgtgcgcatgtatctgcgcgaaatgggctcggtggag
cttctctcccgcgaaggcgaaatcgcgatcgccaagcgtatcgaggccggccgcgagacg
atgatcgcgggtctctgcgaaagcccgcttactttccaggcactgatcatctggcgcgac
gaactgaacgaaggccagacgcttctgcgcgagatcatcgatctcgaaaccacctattcc
ggtcccgaggccaaggctgccccgcagttccagagcgcggaaaagatcgaggcggaccgc
aaggctgccgaagagaaggaaaaggtgcgcaagacgcgtgcggcggccaatgacgacgac
atcaccaatgtcggcggcgacagtcagccggtcgaggaagaggaggaggacgatgatgaa
tcgaacctctcgctcgccgcgatggaagccgaactgcgtccgcaggtgatggagacgctc
gacatcatcgccgagacctataagaagctcaggaagctccaggaccagcaggtcgaagcg
cgtcttgctgcgaccggcacgctctcgccggcgcaggagcgccgctacaaggagctgaag
gatgagctgatcaaggcggtgaagtcgctgtcgctcaaccagaaccgcatcgacgcgctg
gtcgagcagctctatgacatttccaagcggctcatgcagaacgaaggccggctgctgcgt
cttgccgaatcctacggcgtcaagcgcgactcgttcctggagcaatattctggcgccgag
ctcgacccgaactggatgaagtcgatcagcaatctcgccggcaagggctggaaggaattc
gccagggccgagaaccagacgatccgcgatatccgccaggagatccagaatcttgcgacc
gagaccggcatctccatcgccgagttccgccgcatcgtgtcgatggtgcagaagggcgag
cgtgaagcgcgcatcgccaagaaggaaatggtcgaggccaacctgcgcctggtgatttcc
atcgccaagaaatacacgaaccggggcttgcagttcctcgatctcattcaggaaggcaat
atcggcctgatgaaagcggttgataagttcgagtaccgtcggggctacaagttctcgacc
tacgcgacctggtggatccggcaggcgatcacccgttcgatcgccgaccaggcccgcacg
atccgcattccggtgcatatgatcgagacgatcaacaagatcgtccgcacctcgcgccag
atgctgcacgagatcggccgcgagccgacgccggaggaactggcggaaaaactcgccatg
ccgctcgagaaggtgcgcaaggtcttgaagatcgccaaggagccgatctcgctcgaaacg
ccggtcggtgacgaagaggattcgcatctcggcgatttcatcgaggacaagaacgcgctg
ctgccgatcgatgccgccattcaggcgaacctgcgcgaaacgacgacccgtgtcctcgct
tcactgacgccgcgtgaagagcgcgtgctgcgcatgcgcttcggcatcggcatgaatacc
gaccatacgcttgaggaggtcgggcagcagttctcggtcacccgcgagcgtatccgccag
atcgaagcgaaggcactgcgcaagctcaagcatccgagccggtcgcgcaagctgcgctcg
ttcctcgacagctga
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