Sinorhizobium numidicum: PYH37_004913
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Entry
PYH37_004913 CDS
T09000
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
enu
Sinorhizobium numidicum
Pathway
enu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
enu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PYH37_004913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
enu03019
]
PYH37_004913
Enzymes [BR:
enu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PYH37_004913
Messenger RNA biogenesis [BR:
enu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PYH37_004913
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WEX76598
LinkDB
All DBs
Position
1:2791103..2792590
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AA seq
495 aa
AA seq
DB search
MSTFKELGLSEQILATLSANGFEKPTPIQAQAIPLVLKGHDLIGLAQTGTGKTAAFGLPM
IEKLVADGKRPDPRNIRALVLAPTRELVNQIAANLKLFVKRSPLKIGVVVGGVSINKQTE
QLARGVDILVATPGRLLDLVARKAVTLTQARYLVLDEADQMLDLGFIHDLRRISKLVPKN
RQTLLFSATMPKLIAELAGEYLTDPVKVAVTPPGKAADKVEQYVHFVPGKDLKTVILKQT
LTANPDGLSLIFSRTKHGAEKLMKHLDQVGFKAASIHGNKSQGQRERALKAFRDGEIRVL
VATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRD
IEKLMGIQIAVASGEAPADQARPSKGRGGRGSGQHRGNGGQRQGGAPRRDRPAREPGATA
GFAGDDLLRDDRHAQKRDRRDDGRPEGNRNHEAKKHHGRPGAKHGAWRGRNEGQAGDRRE
GGQAVRRADNRGRQG
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
ttgtccacttttaaagagctcggtctttccgagcagatcctggcgacactctccgccaat
ggtttcgaaaagccgacgcccatccaggcgcaggccattccgctggtcttgaagggccat
gatctcatcggcctcgcacagacgggcaccggcaagaccgctgctttcggcctgccgatg
atcgagaagctcgtcgccgacggtaaacgtcccgatccgcgcaacatccgcgctctcgtg
cttgcacccacccgcgaactggtcaaccagatcgcagccaacctcaagcttttcgtgaag
agaagcccgctcaagatcggcgtcgtcgtcggcggcgtctcgatcaacaagcagaccgaa
cagctcgcccgtggtgtcgacattctcgtcgcgacccctggccgcctgctcgatctcgtc
gcccgcaaggcggtgacgctgacgcaggctcgctacctcgtcctcgatgaggccgaccag
atgctcgacctcggctttatccacgacctgcgcaggatctccaagcttgtgccgaaaaac
cgccagacgctgctcttttcggcaaccatgccgaagctgattgccgagcttgccggcgag
tacctgaccgatccggtcaaggtcgcggtcacgcctccgggcaaggccgccgacaaggtc
gagcaatacgtccatttcgttcccggcaaggacctgaagacggtaatcctgaagcagacg
ctgaccgccaatcccgacggtctgtcgctgatcttcagccgcacgaagcatggcgccgag
aagctgatgaagcatctcgaccaggtcggcttcaaggccgcctcgatccatggcaacaag
agccagggtcagcgcgagcgcgcgttgaaggcattccgcgacggtgaaatccgcgtgctc
gttgcgacggacgtcgccgcgcgcggcatcgacatcccgggcgttacccacgtctacaac
tacgatctgccggaagtgccggatgcctatgtgcaccgtatcggccgcacggcccgcaat
ggccgcgacggcatcgcgatcgccttctgcgcgcccgatgaaatccgcctcctacgcgac
atcgaaaagctgatgggcattcagatcgccgtcgccagcggcgaggcgccggccgaccag
gcgcgtccgtcgaagggacgcggtggacgtggtagtggacaacatcgcggcaatggcgga
caacgtcagggcggcgcgccgcgccgtgaccggcccgcacgtgagccgggagcgacggcc
ggctttgccggtgacgacctgctccgcgacgatcgccatgcgcaaaagcgtgaccgccgt
gacgatggccggccggaaggcaaccgcaatcacgaagccaagaagcaccatggccgtccc
ggcgcgaagcacggtgcatggcgcggccgcaacgaaggccaggctggcgaccgccgcgaa
ggcggccaagccgtgcgccgggccgacaatcgcggccgtcagggctga
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