Enterobacter sp. JBIWA008: KGP24_02315
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Entry
KGP24_02315 CDS
T11584
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
env Enterobacter sp. JBIWA008
Pathway
env03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
env00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KGP24_02315 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
env03019
]
KGP24_02315 (rnr)
03016 Transfer RNA biogenesis [BR:
env03016
]
KGP24_02315 (rnr)
Enzymes [BR:
env01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KGP24_02315 (rnr)
Messenger RNA biogenesis [BR:
env03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KGP24_02315 (rnr)
Transfer RNA biogenesis [BR:
env03016
]
Prokaryotic type
tRNA degradation factors
KGP24_02315 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
UAN41345
LinkDB
All DBs
Position
482279..484723
Genome browser
AA seq
814 aa
AA seq
DB search
MSQDPFQEREAEKYANPIPSREFIIEHLTKREKPANREELAVELNIEGEEQIEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGFGFLRMEGRKDDLYLSSEQMKMCIH
GDQILAQPLGADRKGRREARVVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTTMAVDMALRTHEIPYIWPKA
VEEQIESLREEVPEESKAGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPHTPLDNEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
TKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKTLDQA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPTTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESISDRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAQEQGHKGNTTETG
GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVKVEAVNMDDRKI
DFSLISSERAPRNVGKTERERAKKTGNGKPGGGKRRQAGKKVNFEPDSAFRGEKKQKPKA
AKKEARSAKKPSAKTQKIAAATKAKRAAKKKQAE
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttccaggaacgcgaagccgaaaaatacgcgaatcctattcccagc
cgcgagttcatcattgaacacttaacaaaacgcgaaaaacccgccaatcgtgaagaactt
gccgttgaattaaacattgaaggtgaagagcaaattgaagcccttcgccgccgcctgcgc
gcgatggagcgtgacgggcaactggtctttacccgccgccagtgctacgcgctgccagaa
cgcctcgatctgctgaaagggaccgtcattggtcaccgcgatggcttcggctttctgcgc
atggaaggccgtaaggacgatctgtacctctcttctgaacagatgaaaatgtgcatccac
ggcgaccagatcctggcgcagccgctgggcgctgaccgtaaaggccgccgcgaagcgcgc
gtggtacgcgttctggtaccaaaaaccagccagatcgttggccgctactttaccgacgcg
ggcgtgggcttcgtggtgccggacgacagccgtctgagcttcgacatcctgatcccacct
gaagaggtgatgggcgcccgcatgggctttgtggtggtggtggaactcacccagcgccca
acccgtcgcaccaaagcggtaggtaaaatcgtcgaagtactgggcgataacatgggcacc
acgatggccgttgatatggcgctgcgtacccatgaaattccttacatctggccgaaagcg
gttgaagagcagatcgaaagcctgcgcgaagaagtcccggaagagtccaaagcgggccgc
gtggatctgcgctccctgccgctggtcactatcgatggtgaagacgcccgcgacttcgat
gacgccgtctactgcgagaaaaaacgcggcggtggctggcgcctgtgggtcgctattgca
gacgttagctactatgttcgtccgcacaccccgctggataacgaagcgcgcagccgcggt
acctcggtctacttcccgtctcaggtcgtgccgatgctgccggaagtgctgtctaacggc
ctgtgttccctgaacccgcaggttgaccgcctctgtatggtttgcgagatgaccatctcc
accaaagggcgcttaaccggctacaagttctacgaagcggtgatgagctcgcacgcgcgt
ctgacctataccaaggtctggcatatgctgcagggcgatcaggatctgcgtgaacagtac
gcgccgctggtcaaacacatcgaggagctgcataacctctacaaaacgctggatcaggcg
cgcgaagagcgcggcgggatctcgtttgagagtgaagaagcgaaattcattttcaacgca
gaacgccgcattgagcgtatcgagcagacccagcgtaacgatgcgcacaagctgatcgaa
gagtgtatgattctggcgaacatctcggcggcacgattcgtcgagaaagctaaagagcct
gcgctgttccgtattcacgataagccgaccacggaagctattacgtcgttccgctccgtg
ctggccgaactcggtctggagctgccaggcggtaacaagccagagccgcgcgattacgcc
gagctgctggaatccattagcgatcgtccggatgcagaaatgcttcagacgatgctgctg
cgctctatgaagcaggcgatttacgatccggaaaaccgcggccacttcggcctggcgctg
cagtcgtatgcccactttacgtcgccgatccgtcgttatcctgacctctctctgcaccga
gcgatcaagtatctgctggcgcaggagcagggccataaagggaacaccaccgaaaccggc
ggctaccactattcgatggaagagatgctgcagctgggtcagcactgctccatggccgaa
cgtcgtgccgatgaggcaacacgtgacgtggcggactggctgaagtgtgactttatgctg
gaccaggtgggtaacgtctttaaaggcgtgattgccagcgtgaccggctttggtttcttc
gttcgtctggacgagctgttcatcgacggtctggtgcacgtgtccagcctggataacgac
tactaccgcttcgaccaggtcggccagcgcctgattggcgaatctggtggtcagacctat
cgtctgggcgaccgtgtggaagtgaaggttgaagccgtgaatatggacgatcgtaaaatc
gacttcagcctgatctccagcgagcgcgcgccgcgtaacgtcggtaaaaccgagcgtgaa
agggcgaaaaaaaccggtaacggtaaaccgggcggcggtaaacgtcgtcaggcgggcaag
aaggtaaacttcgagccggacagcgcgttccgcggcgagaagaaacagaagccgaaggcg
gcgaagaaagaagcccgctcagcgaaaaaaccttccgcgaaaacgcagaaaatcgctgcc
gccaccaaagcgaagcgcgcggccaagaaaaagcaggcggagtaa
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