Endozoicomonas sp. SCSIO W0465: MJO57_08750
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Entry
MJO57_08750 CDS
T08210
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
enw
Endozoicomonas sp. SCSIO W0465
Pathway
enw02020
Two-component system
enw02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
enw00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
MJO57_08750
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MJO57_08750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
enw03021
]
MJO57_08750
Transcription machinery [BR:
enw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MJO57_08750
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
S1_RRP4
HTH_IclR
Relaxase_C
Motif
Other DBs
NCBI-ProteinID:
USE38234
LinkDB
All DBs
Position
2025427..2026890
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AA seq
487 aa
AA seq
DB search
MKPSLQLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLESEDSETEDTATS
SEGKEELVDLSEAIPEPEPQEMAEWADSIPNELPVDSAWDDVYSSLPANGSDEDYDPLAK
SSSVESLQDHLEWQLDMVPMSDRDRLIGLAIIEAVNPNGYLTCSLDDLYVSLQSQLEELE
IDEIKVLQHRVQQFDPVGCGSIDLKECLLVQLRQLPPSTPHFNNAEKLITLYLDLLGTRD
YARIMRRAKLKEDQLRKALSLIQSFHPKPGSTIDQTEAEYVVPDISVRKIKERWSVELNS
DALPKLRINNNYASMVQRANNSRDNVFMKNHLQEARWFLKNLQSRNETLMKVASQIIAYQ
QDFFEKGDEAMKPLVLADIAEAVGMHESTISRVTTQKYMHTPRGVYELKYFFSSHVSTAE
GGECSSTAIRAHIRKLIAQETPRKPLSDNKIAAILAEQGIKVARRTIAKYRESMNIPPSN
ERKQLVP
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgaagccttccttacagctcaagatgggccagcagttgaccatgacgcctcagctgcag
caagccatccggctgctacagttatcgacactggatcttcagcaagagattcaggaggct
ctcgaatccaaccccatgcttgagtccgaagatagcgagacagaggacacagccaccagc
agtgaaggcaaggaagaactcgttgatctgagtgaggcgataccggaacctgagccacag
gagatggcggaatgggcagacagtatcccgaatgaactgcccgtcgactcagcatgggac
gatgtgtattccagcctgcccgccaacggtagtgatgaggattacgaccccctggcgaag
tcatcttcagtagagtcgcttcaggatcatctggagtggcaactggatatggtgcccatg
agcgatcgggaccggctgattggccttgcaattattgaagcggttaatccgaatggttat
ttgacctgctcactggatgatctttatgtttcactgcaatcccagctggaagagctggag
atcgacgagataaaagtgctgcagcaccgggttcaacaattcgaccctgtcggttgtggc
agtatagacctgaaagagtgcctgctggtccagctgcgtcagcttcccccatcaacacct
catttcaacaatgcggaaaaactgatcaccctttacctggatttacttggcacccgtgat
tacgcacgcatcatgcgcagggccaaactgaaggaagatcagttgcgaaaagccctcagc
ctcattcaaagtttccatccaaaacccggcagcaccattgaccagacagaagctgaatac
gtggttccagatatatcggtccgaaaaatcaaggagcgatggtctgtcgaactgaattcc
gatgcgctgcccaaactgcgcatcaacaataattatgcgtcgatggtccagagggccaac
aacagccgcgacaatgtgttcatgaaaaatcatctgcaggaagcccgctggtttttgaaa
aacctgcaaagtcgaaatgaaacactgatgaaagtcgcgagtcagattattgcttatcag
caggatttttttgaaaaaggcgatgaagccatgaagcccctggtgctggcggatattgcc
gaggctgttggtatgcatgaatcgactatttcccgggtaaccacccagaagtatatgcat
acccctcgtggcgtctatgaactcaagtactttttctccagccatgtcagcacagcagaa
ggtggcgaatgttcatccacggcgattagagcccatattcgcaagctcattgcacaagag
acaccacgcaaaccgctcagtgataataaaattgcggccatattggcagaacagggcatc
aaggttgcccggcgaaccattgccaaataccgggagtccatgaatattcccccgtccaat
gagcggaagcagttagtaccctga
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