Endozoicomonas sp. SCSIO W0465: MJO57_10290
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Entry
MJO57_10290 CDS
T08210
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
enw
Endozoicomonas sp. SCSIO W0465
Pathway
enw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
enw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MJO57_10290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
enw03019
]
MJO57_10290
Enzymes [BR:
enw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MJO57_10290
Messenger RNA biogenesis [BR:
enw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MJO57_10290
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
USE38514
LinkDB
All DBs
Position
complement(2399498..2400832)
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AA seq
444 aa
AA seq
DB search
MSNNLPFSALGLDELLIQAVNEAGYQNPTPIQAKAIPMALTGRDLMASAQTGTGKTAGFT
LPILHRLAQMRASKAIRALVLVPTRELAIQVDNSFQTYGKHTAIKTAAVYGGVDIDDQLQ
VLKEGVDVLVATPGRLVDMINRKHIQLDSLRILVLDEADRMLDLGFRDDIQRIVQNAPTK
RQNLLFSATFSKDIKQLAHEFMRHPVRIELENPNSAANTVSQSFYPVDQQDKPEILSYLI
HGGHWQKVLVFVRTKKAANKVAELLAEDGINAQAIHSDKSQYLRIRTLEDFKDNYFDVLV
ATDVAARGLDIEQLPLVINYDLPKVPQDYVHRIGRTGRAGQKGRAISLVNPEEKKLLAGI
QQLIKKPLEIEPLPYFEDGEVRPAEINEPTSKTRNKRSKPELKTGKPAIKQRSGNKSRNG
STRKPSGTAPKKRPAVFSGKKRKS
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgagcaataacctaccattttccgctcttgggctggatgagttgctgattcaggcagtc
aacgaagcgggctaccagaatcctaccccgattcaggccaaagcgattcccatggccctc
actggtcgtgacctgatggcatcagcccagaccggtaccggtaaaaccgccggttttacc
ttgccaatcctgcaccgactggcgcagatgagagccagtaaagcgatccgcgccctggtg
ctggtccctacccgggaactggccattcaggttgacaatagtttccagacctatggcaag
cacacggctatcaagacagctgccgtctacggtggcgtagatattgacgatcagttgcag
gttctgaaagaaggcgttgatgttctggtggcgacgccgggtcgcctggtggacatgatc
aaccggaagcatatccaactggacagcttgagaatactggtgctggacgaagccgaccgg
atgctggacctgggtttccgtgacgatattcaacgcattgtgcaaaacgcgccgacaaaa
cgtcagaacctgttgttctccgccaccttttccaaagacatcaaacaactggcccatgaa
ttcatgcgccatccggtcaggattgaactggaaaaccccaactctgccgctaacactgtg
tcccagtctttctacccggtagaccagcaggacaaaccggagatcctcagctatctcatc
catggtgggcactggcagaaagtgctggtgtttgtccgcaccaaaaaagccgccaacaag
gttgccgagctgctggcagaagacggcatcaatgcccaggccattcacagcgataaaagt
cagtacctgcgtatccgcacactggaagattttaaagataactattttgatgtcctggta
gcgacggatgtggcagccagaggcctggatatcgaacaactgccgctggtcatcaattat
gaccttcccaaagttccccaggactacgttcatcgcattggccgcaccggtcgcgctgga
caaaaaggcagggctatctctctggttaacccggaagagaaaaagttattggccggtatc
cagcagctgatcaaaaaaccactggaaatagaacctcttccctactttgaagatggtgag
gttcgtcccgctgagattaatgagcccaccagtaaaacacgcaacaagcgaagcaaacct
gaactgaaaacaggaaagcctgcgataaagcagcgttcgggtaataaatcacggaatggc
agcaccagaaaaccttcaggtactgcgccaaagaaaaggcctgctgttttctccggaaaa
aaacggaagtcctga
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