Endozoicomonas sp. SCSIO W0465: MJO57_19895
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Entry
MJO57_19895 CDS
T08210
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
enw
Endozoicomonas sp. SCSIO W0465
Pathway
enw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
enw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MJO57_19895 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
enw03019
]
MJO57_19895 (rne)
03009 Ribosome biogenesis [BR:
enw03009
]
MJO57_19895 (rne)
Enzymes [BR:
enw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MJO57_19895 (rne)
Messenger RNA biogenesis [BR:
enw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MJO57_19895 (rne)
Ribosome biogenesis [BR:
enw03009
]
Prokaryotic type
rRNA processing factors
MJO57_19895 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
USE34399
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All DBs
Position
4435519..4438752
Genome browser
AA seq
1077 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLFDLDIESGAREQKKANIYKAKITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFVGHTGGRPNIRDVIKEGTEVIVQVDKEERGNKGAALTTLVSL
AGRYLVLMPNNPRAGGISRRIEGDERTELREAMSKLNIPAEMGVIVRTAGLGRSTEDLQW
DLDYLLQLWSSIKDAADKNPAPFLIYQESNVIIRAIRDYLRQDVGEVLIDKTSVYEEALD
FVKQVMPQYQNKIKLYKDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSID
INSARATRGGDIEETAFNTNLEAADEVARQLRLRDIGGLIVIDFIDMSNNRNQREVENRI
RQALSVDRARVQTSRISRFGLLEMSRQRLRPSLGETSGVVCPRCSGQGTIRDIESLALSI
LRLMEEEAMKDKTSEIRAQVPVPVAAFLLNEKRKMIAKIEKRHDARIIVIPNANLETPHY
DVQRLRDDNLQEHESSYEIILEGEDSSPEELTTATKSQPRQQAAVRNIAPAQPAPAIRSP
ESKHGFIGSLLKSIGSIFSSDNDDDKSAGQDKSIQQRQPVRRDHQGGQNRKKSRTDSQRR
DKLDNNRPQKERKKSPQERSDSRPNKQENRFERQERRQRDNQEVAEQQEPRQDRRQDQES
ESGSNDRRRRPSSAPRRRSNRQSQRQLQNEPQLQPLLPESTKGSVNASSNATQEARQEST
AQEKHADQRESVASIEKPGIDNSKPATATSEATQFADQLAVTHATPADKAEEASTVSVGK
QTPIANPEATEAPEEVRPRRSRRVKNDPRRLREAQHSAPQVGEPEISTENSFVSPADQKP
SVDKGPAVEARVSATADSEAQSEKAEQVFVEMPTQEKPDEKPAVDPEVITTVEQEPVKPR
PQMTEMAKAVAASHNLDQPAFGSIPSAFEKPVTPGAEADVAEPRAIMTATEAEEMLKQAL
NQSDEDQAVNTSHIPESTQEKTAETETAPATHPAAARSMAVEAPAEQTKDQQDQTAEVKV
SGAAVPTDETSEKPRRRRSRAHNDPRAKRQTQQIELPEVSEAETQEAPQARTEESNL
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaatgttaatcaatgcgacccagcaagaagagctgagggttgcactcgttgat
ggacagcgtctgttcgatctggatattgagtccggagcccgcgagcagaaaaaagccaac
atctacaaagctaaaatcacccgtgtcgagcccagcctggaagctgcttttgtcgacttt
ggcgcagagcgacacggcttcctgccgctgaaagagatttcccgtgaatactttgtcggt
cataccggcggtcgtcctaatatcagggatgtcattaaagaaggcaccgaggttatcgtt
caggtagacaaagaagaacgtggtaacaaaggcgccgctctgacgacgctggtcagcctg
gctggccgctaccttgtgctgatgccaaacaatcctcgcgccggtggaatctcacgccgt
atcgaaggcgatgagcgcactgagctgcgtgaggcgatgagcaagctgaatatccctgcc
gagatgggcgtcatcgttcgtacagcaggccttggccgctctacggaagaccttcaatgg
gatctggactacctcctgcaactctggagttccatcaaagacgctgcagacaaaaatcct
gccccattcctgatttaccaggaaagtaatgtcattatccgcgctatccgtgactacctg
cgccaggatgttggtgaagtattgatcgacaaaacctcggtttatgaagaagccctggac
tttgttaaacaggtcatgccccagtaccagaataagatcaaactgtacaaagacagtgtt
cccctgttcaaccgtttccagatcgaaagtcagattgagacggccttccagcgtgaagtc
aaactgccatccggcggctccatcgttattgatccaaccgaagccctggtatccatcgat
attaactctgcccgcgctacccgcggtggcgacattgaagaaaccgccttcaataccaac
cttgaagcggcggatgaggtcgcacgccagcttcgcctgcgtgatattggtggactgatt
gttatcgacttcatcgatatgagcaacaaccgaaaccagcgggaagtagagaaccgtatt
cgccaggctctgtccgttgatcgcgctcgcgttcagaccagtcgcatctcacgctttggc
cttttggaaatgtcccgtcagcgcctgcgcccatcgctgggtgaaaccagtggcgttgtc
tgcccccgctgttcaggccagggtactattcgggatattgagtctctggccctgtctatt
ctgcgcctgatggaagaagaggcaatgaaggacaagacgtctgaaattcgtgcacaggtt
cccgtcccggtcgctgctttcctgctgaatgaaaagcgcaagatgatcgccaagatcgag
aaacgccatgatgcccgtatcatcgtcattccaaatgccaacctggaaacccctcattac
gacgtccagcgtcttcgtgacgacaatcttcaagagcatgagagcagctacgagatcatc
cttgaaggtgaagactccagcccggaagaactgaccacagcaaccaaatcacaacccaga
caacaggccgctgttcgaaatattgcgcctgcacagcctgcaccggcaatccggtcacct
gagtcaaaacacgggtttattggcagcctgctgaagtccattggcagtatcttcagctcc
gacaatgatgatgacaaatccgctggccaggacaagtcaattcagcaacgccaaccggta
cgtcgagatcatcagggtggccaaaacaggaagaagagccgtactgactctcaacgccgc
gacaagctggataacaatcgtcctcagaaagaacgcaaaaagagtccgcaggaacgttca
gacagtcgtcctaacaagcaggaaaaccgcttcgagaggcaggaaagacgccagcgagac
aaccaggaagtagcggaacagcaggaacccagacaggatcggcgtcaggatcaagagtca
gaatcaggctccaatgatcgccgtcgccgcccgagctcggctcctcgtcgtcgcagcaac
cgtcagtctcagcgacagctgcagaacgaaccacaattgcagccactgctgcctgaaagc
actaaagggtctgttaacgcatcttctaacgctacacaggaagctagacaggaaagcacc
gcacaagagaagcatgctgaccagagagaatcagttgcaagcattgagaaaccagggatt
gataacagcaaaccggcgacagcaacctcagaagctactcaattcgctgatcaacttgcc
gtaactcatgctacgccagcagacaaggcagaggaagccagcacggtttctgtcggaaaa
caaacgccgatcgccaaccctgaggcaactgaagcgccagaagaagtgaggcctcgtcgc
tcacgaagagtgaagaatgacccacgccgcctcagggaagcacagcattctgccccccaa
gtcggtgaacctgaaatctccacagagaatagctttgtgtccccagcggatcagaagcct
tctgtcgataaagggccagcagttgaggccagggtttcagcaacagctgattcagaagca
caatcggaaaaagctgaacaggtctttgttgagatgcccactcaagaaaagccggatgaa
aaaccagccgttgaccctgaagtaataaccaccgttgagcaggaaccggtaaaacctcgt
cctcagatgactgaaatggcaaaagccgttgccgcttcccataacctcgaccaacccgca
tttggctccataccgtctgcattcgagaaaccagttacaccgggagcggaggcagacgtt
gcagaacccagggcgattatgacagccactgaggctgaagagatgttgaagcaggcactg
aatcagtctgatgaagaccaggcagtaaacacttcgcatattccggagagcacacaggaa
aaaactgctgaaaccgaaacggctccagctacacatcctgccgcggccaggagtatggct
gtagaagcaccagccgaacagactaaggatcaacaggaccagactgctgaggttaaggta
agtggagcagcagttcctactgatgaaacctctgaaaagcctcgtcgtcgtcgcagccgg
gcccataatgaccccagagccaaacgccagactcagcagatcgaactacctgaggtatca
gaagctgaaactcaggaagcaccccaggcgcgtactgaagaaagcaatctgtaa
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