Endozoicomonas sp. SCSIO W0465: MJO57_21180
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Entry
MJO57_21180 CDS
T08210
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
enw
Endozoicomonas sp. SCSIO W0465
Brite
KEGG Orthology (KO) [BR:
enw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
enw03019
]
MJO57_21180 (hrpA)
Enzymes [BR:
enw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MJO57_21180 (hrpA)
Messenger RNA biogenesis [BR:
enw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MJO57_21180 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
AAA_19
HA2_N
nSTAND3
ResIII
AAA_23
NACHT
AAA_30
T2SSE
AAA_16
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
USE34632
LinkDB
All DBs
Position
4741907..4745803
Genome browser
AA seq
1298 aa
AA seq
DB search
MSGFSDKQLRQSINQCMIRDRYRLRGQLCRLKRDDKAGLDRVQKKIASSLSLVEQRQASV
PEIRYQQALPVIDRKADIANAIRDHQVVVIAGETGSGKTTQLPKICLEAGRGIFGMIAHT
QPRRLAARAVANRIAEELGGALGEQVGYQVRFTDHSTENTLIKLMTDGILLAEIQNDRFL
NRYDTLIIDEAHERSLNIDFLLGYIKLILPKRPDLKVIITSATIDVERFSRHFDHAPVIE
VSGRTYPVETVYRPLEDLELEGRDADQRLQQGILASLEEIDGLERAGKGKRLGDVLVFLS
GERDIRETHQFLRDAKLPHTDILPLYARLSAAEQNRIFQEHSGRRVILSTNVAETSLTVP
GIRYVIDPGTARISRYSVRSKVQRLPVEAVSQASANQRKGRCGRVAEGICIRLYSEEDFL
SRPEFTDPEILRTNLAAVILQMLRMGLGDIAAFPFVDPPDSKAINDGFKLLQELVAVGKD
RRITPVGRQLGQLPVDPRLGRMLIEAHNNHALHEVLIIVSALAVQDPRERPQDKQQAADQ
RHREFYHDDSDFMTYVNLWEAYEEQRQALSQNQLRKYCNKQFLSFMRMREWRDLHRQLTL
ACKDLQFRLNDSPASYGDVHKSLLSGLLSQLGSKDDEADYMGARNRRFYLFPASTLYKRK
PKWVMAAELVETSRLFARTNGRLEPQWIEPLATHLVKRNYFEPHWEKKRAQVVAFEQVTL
YGLIVVGRRRINYGLIDPVVAREIFIREALVEGHFDSKGAFQKHNLALIEEVDELEAKSR
RRDILVDSETLYHFYDALIPADICNGAGFEKWRKVAERQQPDLLHLSKDYLMQHDAEHVT
VNRYPDRFRWDGLELPLSYHFNPGEPDDGVTLTVPVEALRLLPRHRLEWLVPGMLFDKCV
ALVRSMPKPVRKNFVPVPDFVNGALDSLSACDEPLTEMLGRQLTRMSGVRILEEHWNTES
LDAHLLMNIRVVNEDGEVIGQGRDVNQLRQQFSEHVQDTIRKLAKSHLEQEGLLDWTCGE
LPHEITRKAGGLILKSYPALVDQRDSVAVQLFESPAMADVENRKGLTRLLRIRLSTQLKF
ALSKMVRLKETKLLATNLVNQSQLEDDLQGLIISGVYLNDHNELPGNRESFLMLLEKYKG
DIVPFAEKIDPILNEIFRIAQGVSRQLKGKISFDRALALADIKQHVQRLLQPGFMTSAGM
EWLSHYPRYFRAIEVRLEKLPTQVNRDRAWTEELTLLQQKYEKRRETHRQHKVVDPNLQQ
FYWMVEEYRVSLFAQQLGTRFPVSDKRLRKLWEAVEDI
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
gtgtccggcttttccgataagcaactgcgccagtccattaatcaatgcatgatacgtgac
cgttaccgcttacgggggcaactgtgtcggcttaaacgggatgataaggcaggtctggac
cgagtccagaaaaaaatagcgtcatcactgtcgctggtagagcagagacaagcctctgtt
ccggagatccgttatcagcaggcgctaccggttattgaccggaaagcggatatcgccaac
gctatccgtgatcatcaggtggtggtgatcgccggtgaaaccggatcaggtaagacaacc
cagttgcctaaaatctgtcttgaagcgggtcgcggcatttttggcatgattgctcatact
cagcctcgccgactggcagcccgtgccgtggccaatcgcattgctgaagagctaggggga
gcgcttggggagcaggttggttatcaggtacgtttcaccgatcactccacagaaaacacg
ctgatcaagttgatgacggacggtattctgctggctgagattcagaatgaccgttttctc
aatcgttatgacaccctgatcattgatgaagcccatgagcgcagcctgaatattgatttt
ctgctgggctatataaagctgattctgcctaaacgaccagatctaaaggtgatcatcact
tctgccaccattgatgtcgaacggttttccaggcactttgatcatgcgcccgtgatcgaa
gtctctggcagaacctatccggtagagactgtctatcgtccccttgaggatcttgagctg
gaagggcgtgatgcggatcagcgattacagcaggggattcttgcgtcactggaagagatt
gacggccttgagcgggcaggcaagggtaaacgactgggtgatgtactggtttttctcagt
ggcgaacgggatattcgggaaacccaccagttccttcgggatgcaaaactgccgcatact
gatattctgccgctgtatgcccgtctttctgccgcagagcaaaaccgcatttttcaggaa
cattccggtcgtcgtgtgattctgtcgaccaatgtcgcagaaacctcgttaactgttccg
ggtattcgctatgtgattgatccgggtactgcgcgtatcagccgatacagtgtccggtca
aaagtccagcggctgccggtcgaagccgtgtcgcaggcatcggccaatcagcgtaaaggt
cgctgtggtcgtgttgcagaaggtatctgtattcgcctctactctgaggaggattttctt
tcccggccagagtttaccgacccggagattctcagaaccaaccttgctgcggttatcttg
cagatgttgcgcatggggctgggcgacattgccgcgtttccgtttgtcgatccaccagat
agcaaggccattaatgatggctttaaattgcttcaggagctggtggcagtgggcaaggac
cggcgcattaccccggttggtcgtcaactggggcagctgcctgtcgatccacgccttggg
cgcatgctgattgaagcacataacaatcatgccctgcatgaagtattgattattgtcagt
gccctggcggtgcaggacccgagggagcgcccgcaggataaacaacaggctgcagatcag
aggcatcgggagttttatcacgatgactcggacttcatgacctatgtgaatctatgggaa
gcctatgaagagcagcggcaggcactgtcacagaatcagctgcggaaatactgcaataag
cagttcctgtcttttatgcgtatgcgggagtggcgtgacctccaccgacagctgacactg
gcctgtaaagacctgcaattccggttgaatgacagccctgccagctatggcgatgttcat
aagtcactgctatccggccttttgtcgcagctgggcagcaaagatgatgaagcggattat
atgggtgccaggaaccggcgcttttatctgtttccggcttcgacactgtataagcgaaaa
ccaaaatgggtcatggctgcagagctggtggaaacctccaggctgtttgcccgaaccaat
ggccggttggagcctcaatggattgagccgctggccactcacctggttaagcggaattat
tttgagccgcattgggagaaaaagcgtgcccaggtggtagcgtttgagcaggttactctg
tatggattgattgtagtcggtcgtcgtcggatcaattatggcctgatagatccggtcgtt
gcccgggagatctttatccgcgaagccctggtggaagggcactttgattccaaaggcgcg
tttcagaagcataatctggcattgattgaagaggtggatgaactggaggcaaagtcccgc
cgccgggatattcttgtggacagtgaaacgctctatcacttttatgatgcgttgattcct
gcggatatctgcaatggcgctggctttgagaagtggcgtaaggtggccgagcgacagcag
cctgatttgctccacctcagcaaagattatctgatgcagcacgatgcagaacacgtaacg
gtcaaccgatacccggatcgctttcgctgggacggtttggagctacccctcagttatcac
tttaatccgggtgagcctgatgatggtgtaaccctgaccgtgcctgtcgaggcattaagg
ttgctgcccaggcatcgtcttgaatggctggtgcccggtatgctgttcgacaagtgcgta
gcactggttcgatccatgccgaaaccggtgcgcaagaactttgtccccgtacctgatttt
gtcaacggcgccctggattccctttccgcctgtgatgagccgctgacagagatgcttgga
cgtcagcttacccgtatgtcgggtgtgcgtatcctcgaagagcattggaatacagaaagc
ctggatgcgcatttgctgatgaatatccgggtggtgaatgaggatggtgaggtgattggg
cagggacgtgacgtgaatcagctcaggcaacaattctctgaacatgttcaggatacgatt
cgcaagctggcaaaaagccatctggaacaggaaggtttgctggactggacctgtggagag
ctgcctcatgagataacccgcaaagccggaggactgatattaaagtcctacccggcgctg
gttgatcagcgcgattcagtggccgttcaactgtttgaaagtccggcgatggctgacgtt
gaaaaccgcaaagggttgacccgactgctcaggatcaggttatccacccagcttaagttt
gctttgagcaaaatggtcagattgaaagaaaccaaattattggctaccaatctggtgaac
cagagtcaactggaggatgatttgcagggtttgattattagcggcgtctatctgaatgat
cataacgagttgcccggaaaccgggagtcattcctcatgctgctagagaagtataaagga
gacattgtgccttttgcggagaagattgaccccattcttaatgagatctttcgtattgct
cagggggttagccgacagctgaaaggtaagatcagttttgatcgggcactggcgctggct
gatatcaaacagcatgtgcaaagactgttacagcccggatttatgacttcagcgggtatg
gagtggttaagccattatccccgatacttcagggcaattgaggtcaggctggagaaattg
ccgacccaggtaaaccgtgatcgtgcctggacggaggagttgaccttgctgcagcagaaa
tatgaaaagcgtcgggagactcatcgtcaacacaaggtagttgatcccaatcttcagcag
ttctattggatggttgaagagtatcgggtttcattgtttgcccagcaattgggaactcgt
tttccggtatcggataaacgtctgcgcaagttgtgggaagcagtggaagacatttaa
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