Endozoicomonas sp. SCSIO W0465: MJO57_23555
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Entry
MJO57_23555 CDS
T08210
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
enw
Endozoicomonas sp. SCSIO W0465
Pathway
enw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
enw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MJO57_23555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
enw03019
]
MJO57_23555
Enzymes [BR:
enw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MJO57_23555
Messenger RNA biogenesis [BR:
enw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MJO57_23555
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
DUF8086
AAA_22
P-loop_SecA
PRR20
Motif
Other DBs
NCBI-ProteinID:
USE35062
LinkDB
All DBs
Position
complement(5304664..5306049)
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AA seq
461 aa
AA seq
DB search
MTFANLGLSLPILQAITEQGYKQPSPIQAEAIPAVLSGQDVMAAAQTGTGKTAGFTLPIL
ELLSRGERARPNQVRALVLTPTRELAAQVADSVATYGRHLPIRSSVVFGGVKINPQMMNL
RRGADILVATPGRLLDLYNQNAVKFKHLEVLVLDEADRMLDMGFIHDIRRILALLPGRRQ
NLMFSATFSDEIRQLAKTIVQHPVEIDVSPRNTTARTVRQCIYPVDKSKKPALLTRLIKE
HNWQQVLVFTRTKHGANRLTRHLEGKGILAAAIHGNKSQGARTRALADFKNNEITALVAT
DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGHAVSLVCADESKQLRDIER
LINQQLPREIIVGFEPVNEIPVTQLSDKPLKPGKPKKPKAYDRPVQANGRKGKTPEGKQQ
RGQSNAVKRSGKISSSRVFTEKNSRPRRRKTTNPQGTSAAV
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgaccttcgccaacctcggtctttccctgccgattctgcaagccattactgaacagggc
tataagcagccttctcccattcaggcggaagcaataccggctgttctgtcagggcaggat
gtcatggcagcggctcagacaggcacaggcaaaacagccggttttacgttgccgatactg
gagttgctcagtcgtggcgagagggcaaggcccaaccaggttcgtgcgctggttctgaca
ccgacccgtgagctggcagcccaggtggcagacagtgttgccacctacggtcggcacttg
ccaatacgttcctctgtggtttttggcggcgtcaaaatcaacccgcaaatgatgaatctg
agacggggtgctgacattcttgtcgccacccccggacgactcctggatctctacaatcag
aatgcggtgaagttcaaacacctggaagtgctggttctggatgaagcagaccgtatgctt
gacatgggatttattcacgatattcgtcgtattctggcgttgttgcccgggcgaagacag
aacctgatgttttcggcaacgttttctgatgagattcggcagctggctaaaaccattgtt
caacatccggtagaaatcgatgtttctccccgaaataccacggccagaacggtcaggcaa
tgtatttatccggtggataaaagtaaaaagccggcactgctgacccggttgattaaagag
cataactggcagcaggtgttggtttttacccgaaccaaacacggtgccaaccggctaacc
cgtcatctggaagggaaagggattctggcggcagcaattcatggcaataagagtcaggga
gcccgtaccagggcgctggctgatttcaaaaacaatgaaattacggcgctggtggcaacg
gatatcgctgcccgggggcttgatattgaccagttgcctcaggtggtgaacttcgacctg
cctaatgtaccggaagattatgtgcatcgtatcgggcgaacagggcgtgcaggggcggat
ggccacgctgtttcactggtctgtgctgatgagagtaagcagcttcgggacattgaacgg
ttgattaatcagcagctgcccagagagataatcgtggggtttgaaccggttaatgagatt
ccggtgactcagctatctgataagccactgaagcccggaaagccgaagaagccaaaggct
tatgaccggcctgtgcaagcgaatggaagaaaaggcaagacacctgaaggtaagcagcag
agggggcagagtaatgcagtgaagcgatccgggaaaataagctcaagccgtgtgtttaca
gaaaaaaacagcaggccccgaaggcgcaagacgaccaaccctcaaggcacttctgctgct
gtataa
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