Enterobacter sp. E20: NI40_008395
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Entry
NI40_008395 CDS
T04118
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
enx
Enterobacter sp. E20
Pathway
enx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
enx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NI40_008395 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
enx03019
]
NI40_008395 (rne)
03009 Ribosome biogenesis [BR:
enx03009
]
NI40_008395 (rne)
Enzymes [BR:
enx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NI40_008395 (rne)
Messenger RNA biogenesis [BR:
enx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NI40_008395 (rne)
Ribosome biogenesis [BR:
enx03009
]
Prokaryotic type
rRNA processing factors
NI40_008395 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ALL17173
LinkDB
All DBs
Position
complement(1782633..1785752)
Genome browser
AA seq
1039 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAYNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPVASYLLNEKRAAVSAIEARQGGVRCIIVPNDQMQ
TPHYHVLRVRKGEETTTLSYLLPKLHEEEMSLPSDEEPAERKLPEQPALATFIMPEAPPE
AALEKPAAKPAAQKPEAAVAKAQPAQPGLLSRFFGALKKMFAEEEVQPEQPKEEPKAAKP
ERQQDRRKRQNNRRDRNDRSDRNDRSERRDNRDNRSENNEGREQREDNRRNRREKQQPNV
EDREIRQQAGDESEKSKQRDDQQPRRERSRRRNDEKRQAQQEVKNLNREEPVEQQDGEQE
ERTQVMPRRKQRQLAQKVRFASEVTEESAVVAVETSEIATGTQLAKVDLPAVVENNVEQD
DNGENRDNAGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTIACASPEMASGKVW
IRYPVARPEQVVEEQPVTEEVIAPAAAVEAVVTEAATVVEPQVGEAEAPHAVEVETTHPE
VIAAPVDAAPQLIAEEDAVVAEEVAEVAEPVATVEDTAETLLETTTEEVVQDVEIQVEPV
VEEAKAPEVKPEPVVSAPAAAHVATAPMTRAPAPDYVPEAPRHSDWVRPAFSFDGKGAAG
GHSATHQATAPATRPQSVE
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgcccttgtggat
gggcagcgcctgtacgatctggatatcgaaagtcctggacacgaacagaaaaaagcgaac
atttacaaaggtaaaatcacccgcattgaaccaagccttgaagctgcatttgtcgattac
ggtgctgagcgtcatggtttcctccctctgaaagaaatcgcccgcgaatatttccccgca
aactacaacgcccatggccgcccaaacatcaaagatgttctgcgtgaaggtcaggaagtt
atcgttcagattgataaagaagagcgtggcaacaaaggtgccgcactgaccacctttatc
agcctggcagggagctatctggttctgatgcctaacaacccgcgtgcgggtggcatctct
cgccgtatcgaaggtgatgaccgtaccgagctgaaagaagcgctggcaagcctcgaactg
cctgatggcatggggcttatcgtgcgtaccgcaggcgttggcaaatcagccgaagcgctg
cagtgggacctgagcttccgtctgaagcactgggaagccattcagaaagcagccgaaagc
cgccctgctccgttcctgatccaccaggaaagcaacgttatcgtgcgtgccttccgtgat
tacctgcgtcaggacatcggtgagattctgatcgataacccgaaagtgcttgagctggcg
cgccagcacatcgccgcgctgggtcgtccggatttcaccagcaaaattaaactgtacacc
ggtgaaatcccgctgttcagccactatcagatcgaatcccagattgagtccgccttccag
cgtgaagtgcgtctgccatccggcggttctatcgttatcgataccactgaagcgctgacc
gctatcgacatcaactccgcgcgtgcaacgcgcggtggcgatatcgaagagaccgcctac
aacactaacctcgaagccgctgatgaaatcgcccgccagctccgcctgcgcgacctgggt
ggtctgattgttatcgacttcatcgacatgacccctgttcgccaccagcgtgcggttgaa
aaccgtctgcgcgaagcggtgcgtcaggacagggcgcgtatccagattagccatatctca
cgctttggcctgctggagatgtcccgtcagcgtctgagcccgtctctcggcgagtccagc
catcacgtttgtccgcgctgctccggcaccggtaccgtgcgtgataacgaatctctgtcc
ctctccattctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaggttcac
gccattgtgccggtgcccgttgcctcttacctgcttaacgaaaaacgtgcagcggtaagt
gcgattgaagcgcgtcagggcggcgttcgctgcatcatcgtgccaaacgaccagatgcag
accccacactatcacgtgctgcgcgtgcgtaagggcgaagagacgaccaccctcagctac
ctgctgccgaagctgcatgaagaagagatgtccctgccttccgatgaagagccagccgag
cgcaaactgccagagcagcctgcgttagcgaccttcatcatgcctgaagcaccgccggaa
gcagccctggaaaaacctgcggccaaacctgcagcgcagaaaccagaagccgcggtagcg
aaagcccagccggcgcagccgggtctgctgagccgcttctttggcgcgctgaagaaaatg
tttgctgaagaagaagttcagccagagcagccgaaagaagagccaaaagcagccaagcca
gagcgtcagcaggaccgccgtaagcgtcagaacaaccgccgcgatcgtaacgaccgcagc
gatcgcaatgaccgcagcgagcgtcgtgacaaccgtgacaatcgctctgagaataacgaa
ggccgtgagcaacgcgaagacaaccgtcgcaaccgtcgcgagaaacaacagccgaatgtt
gaagatcgcgaaattcgccagcaggcgggcgatgagtctgagaagagcaaacagcgtgac
gaccagcagccgcgccgtgaacgcagccgtcgtcgtaacgacgagaagcgtcaggcacag
caggaagtcaaaaacctgaaccgcgaagagcctgttgaacagcaggacggcgagcaggaa
gaacgtactcaggttatgccgcgtcgtaagcagcgccagcttgctcagaaagttcgcttc
gcctctgaagtaaccgaagagtcagccgttgtcgcggttgaaactagcgagatcgcaacc
ggtactcagctggcgaaagttgacctgccagcggttgttgaaaacaacgttgagcaggat
gataacggcgaaaaccgtgataacgccggtatgccgcgccgttcacgtcgttctccacgt
catctgcgcgtcagcggtcagcgccgtcgtcgctatcgtgatgagcgttacccgactcag
tcgccaatgccgctaactattgcctgtgcttcgccagaaatggcctccggcaaagtctgg
atccgctacccggttgctcgcccggagcaggttgttgaagaacagcctgtaaccgaagag
gtgattgcaccagcagccgcggtagaagctgtcgtgactgaagcggcaaccgtggttgaa
cctcaggttggtgaagctgaagcacctcacgcagtggaagttgaaaccacccatccagaa
gtgattgccgcgccggttgatgccgcgccgcagcttatcgccgaagaagatgccgtggtg
gctgaggaagtggctgaagtggctgaacctgtagccacagtggaagacaccgctgaaacc
ctgcttgaaaccaccactgaagaagtcgttcaggacgttgagattcaggttgaaccggtt
gtcgaagaagcgaaagcgcctgaggtgaaacctgagccggttgtttctgcaccagccgct
gcccacgtggcgacagcaccaatgacgcgcgccccggcgccggattacgtgcctgaagcc
ccgcgtcacagcgactgggtacgcccggcgttcagcttcgacggtaaaggcgctgcaggc
ggccacagtgcaacgcatcaggcgactgcaccggcgacgcgtccgcagtctgtcgaataa
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