Eucyclogobius newberryi (tidewater goby): 140351205
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Entry
140351205 CDS
T10929
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
eny Eucyclogobius newberryi (tidewater goby)
Pathway
eny03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eny00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
140351205 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eny03400
]
140351205 (msh6)
DNA repair and recombination proteins [BR:
eny03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
140351205 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
140351205
NCBI-ProteinID:
XP_072293048
LinkDB
All DBs
Position
Unknown
AA seq
1379 aa
AA seq
DB search
MSKQQSLFSFFGKSPPPVAAKPKPAPSPTEADLPCSVETSNSSPKEQAKQTPQQPTPKSN
KPQSKNDAKHAKSGFNKLFKDKAPQKKDSSPKFSFNAGSLVWAKMEGYPWWPCMVIPQPL
TGQQMRGKGKDQRAHVHFFDDPPTRGWVNTKNIRAYQGSDSSDAKIGGVFFSNKPVIRRA
MELADAVMFDTDEKRLKMPVCTDPSGDEEEEEEDMELDKSSLTDEDDSFEEQKSEKVKSP
EVDRRSSRASVKNENQPKRRRIVVASDSEGSEDEFKPEHAASSSEDDEEEPALSSEEEPE
HSASEPESPIKPIKRKRPAEKPAISKPKRPSTPITAPKRSPAAVMANTKSRLSAFSAPDS
FESQVNTGPSGGAAVWDHEKLEWLQDGRRKDGKRRRQSEENYDQSSLYVPDDFLNRQSPG
MRKWWQLKADMNDTVIFYKVGKFYELYHMDAVVGVNELGLTFMKGTWAHSGFPEIGFGKF
SDVLVQKGYKVARVEQTETPDMMEARCKSMLKPTKFDKVVKREVCRIITKGTQTYSILDG
APAESQSKFLLSLKEKAEEESSGRCRTYGVCFVDTSVGQFHVGQFEDDRHCSRLRTLIAH
YPPAEVLFEKGNPSVETRKIFKASLSAALQEGLNAGSQFWDAQKTLKTLSEEDYFSENAD
KEKSGNSLLPPLLKNMTSESDSLCLTPKDGYELALSALGGSIFYLKKCLVDQELLSMANF
EEYVPVDVELEKASGAESFFSQTRQRMVLDGVTLANLEIFQNGSGGTEGTLLEMLDTCST
PFGKRLLKQWLCAPLCNAKSIRDRLDAVEDLMGAQAQASEVSELLKKLPDLERLLSKIHS
IGTPLKGQDHPDSRAVLYEEVTYSKRKIADFLSALEGFKTMQEIIDVMSAVSGDFRSMLL
CQIVVLKSEKNGIFPDLSDELKRWETAFDHQKARTTGVITPKAGFDPEFDQALTGIKNCE
RDLQDYLDRQKKRLGCKNMSYWGTSKNRFQMEVPDSVAERNIPEEYEVKSTKKGWKRYVT
KQSERLFSELQGFEEKRDAALKDCMRRLFYNFDKNYKDWKTAVECIAVLDVLLALSRYSQ
GGDGPMARPELMLPEHDEKSAAPFIDLLGSRHPCVTKTFFGDDFIPNDIHVGCPGSSEAD
EEKSPASCVLVTGPNMGGKSTLMRQCGLVIILAQMGCYVPAESLCFTPVDRVFTRLGASD
RIMAGESTFFVELSETASILHHATKHSLVLLDELGRGTATYDGTAIACAVVKELAEKICC
RTLFSTHYHSLVEDYANNPAVRLGHMACMVENECEDPSQETITFLYKFITGSCPKSYGFN
AARLANLPEEVIQSGHKKAREFERSTISLRLFKKVCQLAEDDTLDRTHFTAIVQMIHTL
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaacaacaatctctttttagctttttcggcaagtctccgccaccggtcgctgcc
aaaccgaagccggctccatctcctaccgaggccgacctgccgtgctccgtggagacgtcg
aactcttctcccaaagagcaagcgaaacagacgccccaacaaccgaccccgaagagcaac
aagccgcagtctaaaaatgacgcgaaacatgcaaaaagtggattcaacaaactgtttaaa
gacaaagcaccgcagaaaaaagacagcagcccaaagttctcatttaatgcaggctcgctg
gtgtgggccaaaatggagggttacccctggtggccttgtatggtaataccacagccttta
acggggcagcagatgagaggaaaaggcaaggaccaacgcgcacatgttcatttctttgat
gacccaccaacaagaggatgggtcaacacaaaaaacatccgagcataccaggggtctgac
agcagcgatgccaaaattggaggggttttcttcagtaacaagcctgtcattcgtcgtgcg
atggagctcgctgatgccgtcatgtttgacaccgatgaaaaacgactaaagatgcctgtt
tgcactgacccctctggtgacgaagaggaggaggaagaggacatggagcttgacaagtca
tccttaactgatgaagatgacagttttgaagagcagaagagtgagaaagtgaagtcgcct
gaagtcgaccgtcgttcttccagagcgtcggtgaaaaacgaaaaccagcccaaacgcagg
cgtatcgttgtggcttcagacagtgagggctctgaagatgaattcaaacctgagcatgca
gccagcagcagtgaggatgacgaggaagaacccgccctgtccagcgaagaggaaccagag
cactcagcgtccgaaccagagagcccaataaaacccatcaaacgcaaacgtccagctgag
aaacctgccatttccaaacccaaaaggcccagtaccccgatcactgctcccaaacggtct
ccagcagcggtcatggcaaataccaagtcccgcctctccgctttctctgccccggacagc
ttcgagagccaggtgaatactggtccaagtggcggagcagcagtttgggaccacgagaag
ttggaatggctacaggatgggcgcaggaaagacggcaaaaggcgtcgacaatccgaggaa
aattatgaccaatcctctctctacgtcccggacgactttttaaaccgccagagtccaggg
atgcggaaatggtggcagctcaaggccgacatgaacgatacagttatcttctacaaagtg
ggcaagttttacgagctttaccacatggatgccgttgtaggtgtcaatgaacttgggctt
acgttcatgaaaggcacgtgggcacattcaggctttccagaaataggctttgggaaattt
tctgatgtgcttgttcaaaaaggctacaaggtggcgagagtggagcagacggagactcca
gacatgatggaagcacgctgcaagagcatgcttaaacccacaaaatttgacaaagtggtg
aaaagagaggtgtgtaggattatcaccaaggggacgcagacttacagcatcctggatggt
gctccggcagagagccagagcaagtttctgttaagtttgaaggaaaaggctgaggaggag
agctcaggccgctgccgtacatatggagtgtgttttgtggacacctctgtgggtcagttc
cacgtgggacagtttgaggatgaccgccactgctcccgtctccgcaccctgatcgcccac
tatcctcccgctgaggtgctctttgaaaaggggaatccctctgtggagacgcgcaaaatc
ttcaaagcctctttgtcagctgctctacaggaaggactcaatgctggcagtcagttttgg
gatgctcagaaaactcttaaaaccctttcggaagaagattatttcagcgaaaacgctgac
aaagaaaagagcggtaacagccttctccctcctctcctcaaaaacatgacgtcagagagt
gattccttgtgccttacgcctaaagatggctacgagctggcactttctgccctgggtggg
agcattttctacttgaagaagtgtctagtggaccaggaactgctgtctatggccaacttt
gaagagtatgtccctgtagatgtggagttggagaaagcatccggggccgagagcttcttc
tcccaaacacgacagcgcatggttttggatggagtaactcttgcaaatttggagatattt
caaaatggatctggtggcacagaggggacattgctggagatgttggatacatgttcaacc
ccatttggaaaaaggcttttaaaacagtggttatgtgcgcccctgtgtaacgccaagtct
atccgggaccggctggacgctgtagaggatcttatgggggctcaagcccaggcctcagaa
gtgtcggagctgctcaaaaagcttccagacttagagcgacttctcagtaaaatccacagc
atcgggacgcctctgaagggacaggaccatcccgactccagggctgtcctctacgaagaa
gtaacctacagtaaacgcaaaatcgcagacttcctctcggcgctggaaggttttaaaacc
atgcaagagatcatcgatgtcatgtctgctgtgtcaggtgatttccggtccatgttgctt
tgtcaaatcgttgtattgaagagcgaaaagaacggcatctttcctgatctctcggatgag
ctcaaacgctgggagacggcgttcgaccaccaaaaagcacgcaccactggagtcatcacc
ccaaaagctggcttcgacccggagtttgaccaagccctaactggcatcaaaaactgcgag
cgagatctgcaagattatttagacaggcagaagaagaggctcggctgtaaaaatatgtcc
tactggggaacgagcaaaaaccgctttcagatggaggtcccggacagcgttgcagagcgg
aacatcccagaggagtacgaggtaaagtccacgaagaaaggctggaaacgctacgtgaca
aagcagtcggagaggttgttttctgagctgcagggttttgaggaaaagcgagacgccgca
ctcaaagactgcatgagacggctcttctacaactttgacaaaaactacaaagactggaag
accgctgtggagtgcatagctgtgcttgatgtgcttttagccctgtcgcgctatagtcag
ggcggagacgggccaatggcgaggcccgagttgatgcttcctgaacacgacgagaagtct
gctgctcccttcattgatctgctggggtctcgtcacccctgtgtcacgaagacatttttt
ggagacgacttcatccccaacgacatccacgtgggctgtcccgggagcagtgaggccgac
gaagagaagagccccgcctcctgtgtcctggtcactgggcccaacatgggaggcaagtcc
acgctcatgagacagtgtggactcgtgatcatcctcgctcagatgggctgctatgttcct
gctgagagcctctgcttcactccagttgacagagtcttcactcgcctcggggcttcagat
cgaataatggccggtgagagcactttcttcgtggagctcagtgagacggccagtatcctg
caccacgccacaaaacactcactcgtgcttctggatgaacttggaagaggcacggcgacg
tacgacggaacagccattgcctgtgcagtggtgaaggaactggctgagaagatctgctgt
cggaccctgttctccactcattaccactcactggtcgaggactacgccaacaaccccgcg
gtccgcctgggacacatggcctgcatggtggagaatgaatgtgaagatccaagtcaagaa
accattacgttcctgtacaagttcatcacagggtcctgtccaaagagttacggttttaat
gccgctcgcctcgccaacctgcccgaggaggtgatccagagcgggcacaagaaggccaga
gagttcgagaggagcaccatcagcctcagactcttcaagaaagtctgccagttggcagag
gatgacactctggacaggacccacttcacagctattgttcaaatgattcacacactgtag
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